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Training course "From zero to hero, Part II: Understanding and fixing intra-node performance bottlenecks"

(Course no. 1092019 in the training programme 2019 of Forschungszentrum Jülich)

05 Nov 2019 09:00
06 Nov 2019 16:30
Jülich Supercomputing Centre, Ausbildungsraum 1, building 16.3, room 213a
Target audience:
Scientists/Developers who want to understand performance-critical hardware features of modern CPUs such as SIMD, ILP, caches or out-of-order execution, and utilize these features in their applications in a performance portable way. (Advanced course)

Generic algorithms like FFTs or basic linear algebra can be accelerated by using 3rd-party libraries and tools especially tuned and optimized for a multitude of different hardware configurations. But what happens if your problem does not fall into this category and 3rd-party libraries are not available?

In Part I of this course we provided insights in today's CPU microarchitecture. As example applications we used a plain vector reduction and a simple Coulomb solver. We started from basic implementations and advanced to optimized versions using hardware features such as vectorization, unrolling and cache tiling to increase on-core performance. Part II sheds some light on achieving portable intra-node performance.

Continuing with the example applications from Part I, we use threading with C++11 std::thread to exploit multi-core parallelism and SMT (Simultaneous Multi-Threading). In this context, we discuss the fork-join model, tasking approaches and typical synchronization mechanisms.

To understand the parallel performance of memory-bound algorithms we take a closer look at the memory hierarchy and the parallel memory bandwidth. We consider data locality in the context of shared caches and NUMA (Non-Uniform Memory Access).

In this course we present several abstraction concepts to hide the hardware-specific optimizations. This improves readability and maintainability. We also discuss the overhead costs of the introduced abstractions and show compile-time SIMD configurations as well as corresponding performance results on different platforms.

Covered topics:

  • Memory Hierarchy: From register to RAM
  • Data structures: When to use SoA, AoS and AoSoA
  • Vectorization: SIMD on JURECA, JURECA Booster and JUWELS
  • Unrolling: Loop-unrolling for out-of-order execution and instruction-level parallelism
  • Separation of concerns: Decoupling hardware details from suitable algorithms

This course is for you if one of the following questions:

  • Why is my parallel performance so bad?
  • Why should I not be afraid of threads?
  • When should I use SMT (hyperthreading)?
  • What is NUMA and why does it hurt me?
  • Is my data structure optimal for this architecture?
  • Do I need to redo everything for the next machine?
  • Why is it that complicated, I thought science was the hard part?

The course consists of lectures and hands-on sessions. After each topic is presented, the participants can apply the knowledge right-away in the hands-on training. The C++ code examples are generic and advance step-by-step.

Participation in the Part I course or deep knowledge of the covered topics;
Linux (ssh), Command line tools (grep, less), knowledge of Fortran, C or C++ and a threading framework (std::thread, pthreads, ...);
Experience with own code exhibiting performance/scaling bottlenecks;
Git: examples are provided in a git repository
Editors: vim or emacs to work on remote machines
The course is given in English.
2 days
5-6 November 2019, 09:00-16:30
Jülich Supercomputing Centre, Ausbildungsraum 1, building 16.3, room 213a
Number of participants:
minimum 5, maximum 15
Andreas Beckmann, Dr. Ivo Kabadshow, JSC
Photo Andreas Beckmann
Andreas Beckmann
Phone: +49 2461 61-8713
Please register with Andreas Beckmann until 25 October 2019.
If you do not belong to the staff of Forschungszentrum Jülich, we need these data for registration:
Given name, name, birthday, nationality, complete home address, email address