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Institute for Advanced Simulation (IAS)

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Software

Structure Prediction

Temporary out of order!

We are providing three local structure prediction servers:

  • DHPRED (Version 0.1)

    Prediction of dihedral angle regions from sequence

  • BETTY (Version 0.1)

    Beta-sheet type prediction from sequence

  • LOCUSTRA (Version 1.0)

    Prediction of local protein structure from sequence

Protein Simulations

We are involved in two Open Source packages for Monte Carlo simulations of small proteins: SMMP and ProFASi (see also ProFASi Gallery).

Software Available at JSC

A number of software packages that are interesting for biological simulations are already installed on our HPC sytems, e.g.,

  • AMBER
  • GROMACS
  • NAMD

For an extended list of software packages and their availability on our systems check here.


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