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Scientific Application Software

JSC provides a huge variety of scientific application software to its user community. The dominant part of these packages and libraries are parallelized and installed on JSCs supercomputers. Serial applications and typical desktop environments are provided to users of local workstations.

Additional Software on JUGENE

Libraries/Tools in /bgsys/local (compiled for PowerPC450)

SoftwareDescription
hdf5 (tbd)Management of extremely large and complex data collections
NetCDF

Self-describing, machine-independent data formats

Programs running on the compute nodes, writing files, have to be compiled with the inlude/library paths: -I/bgsys/local/netcdf/include -L/bgsys/local/netcdf/lib

Parallel-NetCDF

Self-describing, machine-independent data formats

The Parallel-NetCDF is only available for programs running on the compute nodes.
While compiling add the inlude/library paths: -I/bgsys/local/parallel-netcdf/include/ -L/bgsys/local/parallel-netcdf/lib -lpnetcdf

sionlibScalable I/O library for parallel access to task-local files
UNITEUNIform Integrated Tool Environment for debugging and performance analysis:
Scalasca, papi, ihpct, mpiP, vampir, totalview, ddt


Libraries/Tools in /usr/local (compiled for PowerPC Linux)

LibraryDescription
a2psPost Script Tool
adsmback adsmarch TSM - Tivoli Storage Manager for Data Backup and Data Archive
emacsEditor
ghostscriptPost-Script-Reader (gs)
llview List active jobs and reservation list (GUI)
MASSMathematical Acceleration SubSystem (part of the compilers)
NetCDF

Self-describing, machine-independent data formats

Programs running on the front-end nodes have to be compiled with the inlude/library path:.-I/usr/local/include -L/usr/local/lib

perlProgramming Language
Sionlib Scalable I/O library for parallel access to task-local files
jdate.plDate calculations in textual format and Julian date (Perl Script).



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