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Journals 2013

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Construction of a prophage-free variant of Corynebacterium glutamicum ATCC 13032 - a platform strain for basic research and industrial biotechnology
Applied and environmental microbiology 79(19), 6006-6015 (2013) [10.1128/AEM.01634-13]  GO

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IpsA, a novel LacI-type regulator, is required for inositol-derived lipid formation in Corynebacteria and Mycobacteria
BMC biology 11(1), 122 (2013) [10.1186/1741-7007-11-122]  GO

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TCA cycle involved enzymes SucA and Kgd, as well as MenD: efficient biocatalysts for asymmetric C-C bond formation
Organic letters 15, 452-455 (2013) [10.1021/ol3031186 ]  GO

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13C-Flux Spectral Analysis of Host-Pathogen Metabolism Reveals a Mixed Diet for Intracellular Mycobacterium tuberculosis
Chemistry & biology 20, 1012-1021 (2013) [10.1016/j.chembiol.2013.06.012]  GO

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Psymberin - biologische Eigenschaften und Ansätze zu Total- und Analogasynthesen
Angewandte Chemie 125(42), 11164 - 11190 (2013) [10.1002/ange.201301259]  GO

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Recombineering in Corynebacterium glutamicum combined with optical nanosensors: a general strategy for fast producer strain generation
Nucleic acids research 41(12), 6360-6369 (2013) [10.1093/nar/gkt312]  GO

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Effects of uncertainties in experimental conditions on the estimation of adsorption model parameters in preparative chromatography
Computers & chemical engineering 55, 148 - 157 (2013) [10.1016/j.compchemeng.2013.04.013]  GO

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Enzyme - Selektivität nutzbar machen
GIT 2013(4), 252-254 (2013)  GO

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Cloud MapReduce for Monte Carlo bootstrap applied to Metabolic Flux Analysis
Future generation computer systems 29(2), 582-590 (2013) [10.1016/j.future.2011.10.007]  GO

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Advanced in vivo applications of blue light photoreceptors as alternative fluorescent proteins
Photochemical & photobiological sciences 12(7), 1125-1134 (2013) [10.1039/c3pp50040c]  GO

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Omix - A Visualization Tool for Metabolic Networks with Highest Usability and Customizability in Focus
Chemie - Ingenieur - Technik 85(6), 849-862 (2013) [10.1002/cite.201200234]  GO


Leaving home ain't easy: protein export systems in Gram-positive bacteria
Research in microbiology 164(6), 664 - 674 (2013) [10.1016/j.resmic.2013.03.014]  GO

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Synthesis of Highly-Substituted Enantiomerically Pure Allylboronic Esters and Investigation of Their Stereoselective Addition to Aldehydes
The journal of organic chemistry 78(22), 11549 - 11559 (2013) [10.1021/jo402130u]  GO

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Crystal and solution studies reveal that the transcriptional regulator AcnR of Corynebacterium glutamicum is regulated by citrate:Mg2+ binding to a non-canonical pocket
The journal of biological chemistry 288, 15800-15812 (2013) [10.1074/jbc.M113.462440]  GO

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Zonal rate model for axial and radial flow membrane chromatography. Part I: Knowledge transfer across operating conditions and scales
Biotechnology & bioengineering 110(4), 1129-1141 (2013) [10.1002/bit.24771]  GO

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Computational fluid dynamic simulation of axial and radial flow membrane chromatography: Mechanisms of non-ideality and validation of the zonal rate model
Journal of chromatography / A 1305, 114 - 122 (2013) [10.1016/j.chroma.2013.07.004]  GO

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Microfluidic Picoliter Bioreactor for Microbial Single-cell Analysis: Fabrication, System Setup, and Operation
Journal of visualized experiments 82, 50560 (2013) [10.3791/50560]  GO

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Beyond growth rate 0.6: Corynebacterium glutamicum cultivated in highly diluted environments
Biotechnology & bioengineering 110(1), 220 - 228 (2013) [10.1002/bit.24616]  GO

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Engineering stereoselectivity of ThDP-dependent enzymes
The FEBS journal 280(24), 6374–6394 (2013) [10.1111/febs.12496]  GO

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Combined Fluxomics and Transcriptomics Analysis of Glucose Catabolism via a Partially Cyclic Pentose Phosphate Pathway in Gluconobacter oxydans 621H
Applied and environmental microbiology 79(7), 2336-2348 (2013) [10.1128/AEM.03414-12]  GO

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Destabilized eYFP variants for dynamic gene expression studies in Corynebacterium glutamicum
Microbial biotechnology 6(2), 196–201 (2013) [10.1111/j.1751-7915.2012.00360.x]  GO

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Visualization of Imbalances in Sulfur Assimilation and Synthesis of Sulfur-Containing Amino Acids at the Single-Cell Level
Applied and environmental microbiology 79(21), 6730 - 6736 (2013) [10.1128/AEM.01804-13]  GO

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Reengineered carbonyl reductase for reducing methyl-substituted cyclohexanones
Protein engineering design and selection 26(4), 291 - 298 (2013) [10.1093/protein/gzt001]  GO

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Complex Regulation of the Phosphoenolpyruvate Carboxykinase Gene pck and Characterization of Its GntR-Type Regulator IolR as a Repressor of myo-Inositol Utilization Genes in Corynebacterium glutamicum
Journal of bacteriology 195(18), 4283 - 4296 (2013) [10.1128/JB.00265-13]  GO

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Conversion of Corynebacterium glutamicum from an aerobic respiring to an aerobic fermenting bacterium by inactivation of the respiratory chain
Biochimica et biophysica acta / Bioenergetics 1827(6), 699 - 708 (2013) [10.1016/j.bbabio.2013.02.004]  GO

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Biochemical characterization of an alcohol dehydrogenase from Ralstonia sp.
Biotechnology & bioengineering 110(7), 1838 - 1848 (2013) [10.1002/bit.24857]  GO

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Glycerol as a substrate for aerobic succinate production in minimal medium with Corynebacterium glutamicum
Microbial biotechnology 6(2), 189–195 (2013) [10.1111/j.1751-7915.2012.00347.x]  GO

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Transkriptionsregulatoren im Dienste der Biotechnologie
Biospektrum 19(7), 739 - 741 (2013) [10.1007/s12268-013-0385-y]  GO

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Metabolic engineering of microorganisms for the synthesis of plant natural products
Journal of biotechnology 163(2), 166 – 178 (2013) [10.1016/j.jbiotec.2012.06.001]  GO

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Quantitative quenching evaluation and direct intracellular metabolite analysis in Penicillium chrysogenum
Analytical biochemistry 438(1), 47 - 52 (2013) [10.1016/j.ab.2013.03.021]  GO

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C-C-bond formation using ThDP-dependent lyases
Current opinion in chemical biology 17(2), 261–270 (2013) [10.1016/j.cbpa.2013.02.017]  GO

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Benzylic hydroxylation of aromatic compounds by P450 BM3
Green chemistry 15(9), 2408 - 2421 (2013) [10.1039/c3gc40838h]  GO

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Monitoring of population dynamics of Corynebacterium glutamicum by multiparameter flow cytometry
Microbial biotechnology 6(2), 157–167 (2013) [10.1111/1751-7915.12018]  GO

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Synthesis of 8-Desmethoxy Psymberin: A Putative Biosynthetic Intermediate Towards the Marine Polyketide Psymberin
Chemistry 19(25), 8300 - 8308 (2013) [10.1002/chem.201203149]  GO

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The Psymberin Story-A detailed overview of its biological properties and approaches towards total and analogue syntheses
Angewandte Chemie / International edition 52(42), 10960 - 10985 (2013) [10.1002/anie.201301259]  GO

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Jahresrückblick Organische Chemie: Naturstoff(total)synthese
Nachrichten aus der Chemie 61, 278-279 (2013)  GO

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Enantiomerically Pure Allylboronic Esters as Versatile Reagents in the Enantioselective Synthesis of Dihydro-α-pyrone-Containing Natural Products
Synthesis 45(08), 1106 - 1114 (2013) [10.1055/s-0032-1318440]  GO

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A Mild PPTS-Catalyzed Acetalization of α,β-Unsaturated Aldehydes: The First Single-Step Protocol towards Benzylic Acetals
Synthesis 45(06), 729 - 733 (2013) [10.1055/s-0032-1318169]  GO

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Research on industrial biotechnology within the CLIB-Graduate Cluster—Part III
Journal of biotechnology 167(2), 73 - 74 (2013) [10.1016/j.jbiotec.2013.07.022]  GO

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A new multicopper oxidase from Gram-positive bacterium Rhodococcus erythropolis with activity modulating methionine rich tail
Protein expression and purification 89(1), 97 - 108 (2013) [10.1016/j.pep.2013.02.003]  GO

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Revisiting the Enantioselective Sequence Patterns in Enoate Reductases
ChemCatChem 5(3), 711 - 713 (2013) [10.1002/cctc.201200668]  GO

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Toward biotechnological production of adipic acid and precursors from biorenewables
Research on Industrial Biotechnology within the CLIB-Graduate Cluster - Part III, Journal of biotechnology 167(2), 75-84 (2013) [10.1016/j.jbiotec.2012.07.008]  GO

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Polydimethylsiloxane (PDMS) Sub-Micron Traps for Single-Cell Analysis of Bacteria
Micromachines 4(4), 357 - 369 (2013) [10.3390/mi4040357]  GO

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Microfluidic growth chambers with optical tweezers for full spatial single-cell control and analysis of evolving microbes
Journal of microbiological methods 95(3), 470 - 476 (2013) [10.1016/j.mimet.2013.09.002]  GO

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A Finite Element Method for Spatially Resolved Simulation of Packed Bed Chromatography
Proceedings in applied mathematics and mechanics 13(1), 511 - 512 (2013) [10.1002/pamm.201310248]  GO

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Fast and accurate parameter sensitivities for the general rate model of column liquid chromatography
Computers & chemical engineering 56, 46 - 57 (2013) [10.1016/j.compchemeng.2013.04.021]  GO

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Evidence for a Key Role of Cytochrome bo3 Oxidase in Respiratory Energy Metabolism of Gluconobacter oxydans
Journal of bacteriology 195(18), 4210 - 4220 (2013) [10.1128/JB.00470-13]  GO

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Role of the pentose phosphate pathway and the Entner–Doudoroff pathway in glucose metabolism of Gluconobacter oxydans 621H
Applied microbiology and biotechnology 97(10), 4315-4323 (2013) [10.1007/s00253-013-4707-2]  GO

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Secretory production of an FAD cofactor-containing cytosolic enzyme (sorbitol-xylitol oxidase from Streptomyces coelicolor ) using the twin-arginine translocation (Tat) pathway of Corynebacterium glutamicum
Microbial biotechnology 6(2), 202–206 (2013) [10.1111/1751-7915.12005]  GO

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Taking Control over Control: Use of Product Sensing in Single Cells to Remove Flux Control at Key Enzymes in Biosynthesis Pathways
ACS Synthetic Biology 3(1), 21–29 (2013) [10.1021/sb400059y]  GO

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Simultaneous utilization of glucose and gluconate in Penicillium chrysogenum during overflow metabolism
Biotechnology & bioengineering 110(12), 3235 - 3243 (2013) [10.1002/bit.24974]  GO

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Fusion of a Flavin-Based Fluorescent Protein to Hydroxynitrile Lyase from Arabidopsis thaliana Improves Enzyme Stability
Applied and environmental microbiology 79(15), 4727 - 4733 (2013) [10.1128/AEM.00795-13]  GO

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Two Steps in One Pot: Enzyme Cascade for the Synthesis of Nor(pseudo)ephedrine from Inexpensive Starting Materials
Angewandte Chemie / International edition 52(26), 6772 - 6775 (2013) [10.1002/anie.201300718]  GO

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Reductive whole-cell biotransformation with Corynebacterium glutamicum: improvement of NADPH generation from glucose by a cyclized pentose phosphate pathway using pfkA and gapA deletion mutants
Applied microbiology and biotechnology 97(1), 143 - 152 (2013) [10.1007/s00253-012-4314-7]  GO

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SoxR as a Single-Cell Biosensor for NADPH-Consuming Enzymes in Escherichia coli
ACS Synthetic Biology 3(1), 41-47 (2013) [10.1021/sb400110j]  GO

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Direct Oxidation of Cycloalkanes to Cycloalkanones with Oxygen in Water
Angewandte Chemie / International edition 52(8), 2359 - 2363 (2013) [10.1002/anie.201204464]  GO

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Performance of iterative equation solvers for mass transfer Problems in three-dimensional sphere packings in COMSOL
Simulation modelling practice and theory 33, 115-131 (2013) [10.1016/j.simpat.2012.10.004]  GO

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Recognition of microbial and mammalian phospholipid antigens by NKT cells with diverse TCRs
Proceedings of the National Academy of Sciences of the United States of America 110(5), 1827 - 1832 (2013) [10.1073/pnas.1220601110]  GO

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Nanobatteries in redox-based resistive switches require extension of memristor theory
Nature Communications 4, 1771 - (2013) [10.1038/ncomms2784]  GO

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Proline addition increases the efficiency of L-lysine production by Corynebacterium glutamicum
Engineering in life sciences 13(4), 393-398 (2013) [10.1002/elsc.201200187]  GO

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Putting bugs to the blush: Metabolic engineering for phenylpropanoid-derived products in microorganisms
Bioengineered bugs 4(6), 1-8 (2013) [10.4161/bioe.23885]  GO

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Pushing product formation to its limit: Metabolic engineering of Corynebacterium glutamicum for l-leucine overproduction
Metabolic engineering 22, 40-52 (2013) [10.1016/j.ymben.2013.12.001]  GO

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Genome-Wide Transcriptional Profiling of the Purple Sulfur Bacterium Allochromatium vinosum DSM 180T during Growth on Different Reduced Sulfur Compounds
Journal of bacteriology 195(18), 4231 - 4245 (2013) [10.1128/JB.00154-13]  GO

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13CFLUX2--high-performance software suite for 13C-metabolic flux analysis
Bioinformatics 29(1), 143 - 145 (2013) [10.1093/bioinformatics/bts646]  GO

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Tailoring the S -Selectivity of 2-Succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate Synthase (MenD) from Escherichia coli
ChemCatChem 5, 3587 - 3594 (2013) [10.1002/cctc.201300318]  GO

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(S)-Selective MenD variants from Escherichia coli provide access to new functionalized chiral α-hydroxy ketones
Chemical communications 49, 2061-2063 (2013) [10.1039/c3cc38607d]  GO

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Isotopically non-stationary metabolic flux analysis: complex yet highly informative
Current opinion in biotechnology 24(6), 979 - 986 (2013) [10.1016/j.copbio.2013.03.024]  GO

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Metabolic isotopomer labeling systems. Part III: Path tracing
Mathematical biosciences 244(1), 1-12 (2013) [10.1016/j.mbs.2013.02.012]  GO

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Biotechnologie von morgen - DECHEMA-Fachgruppe "Systembiologie und Synthetische Biologie"
Biospektrum 06, 680-682 (2013)  GO

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Bio-based production of organic acids with Corynebacterium glutamicum
Microbial biotechnology 6(2), 87–102 (2013) [10.1111/1751-7915.12013]  GO

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C1 Metabolism in Corynebacterium glutamicum: an Endogenous Pathway for Oxidation of Methanol to Carbon Dioxide
Applied and environmental microbiology 79(22), 6974 - 6983 (2013) [10.1128/AEM.02705-13]  GO

Finished master, bachelor and diploma thesis in 2013

Bachelor Thesis

Untersuchung des Exometaboloms von Corynebacterium glutamicum ATCC 13032 bei der Metabolisierung von Glucose, Acetat und Pyruvat
96 p. (2013)

Bachelor Thesis

Untersuchung zur Klonierung und Charakterisierung technisch nutzbarer Enzyme aus Arabidopsis thaliana - Phenylalanin-Ammoniak-Lyase und Hydroxynitril-Lyase
80 p. (2013)

Bachelor Thesis

Klonierung, Expression und Charakterisierung eines FRET-basierten Lysinsensors
82 p. (2013)

Master Thesis

Whole cell process strategies for modular synthetic Enzyme cascades towards diols
75 p. (2013)

Bachelor Thesis

Herstellung und Charakterisierung FRET-basierter Biosensoren
76 p. (2013)

Master Thesis

Ganzzelltransformation zur Synthese von (R)-2-Butanol in reinen Substratsystemen
88 p. (2013)

Bachelor Thesis

Produktion von α-Ketoisocaproat mit Corynebacterium glutamicum
71 p. (2013)

Master Thesis

Microbial Growth Studies in Well Controlled pL Environments on Single Cell Level
98 p. (2013)

Bachelor Thesis

Erweiterung der Toolbox Thiamindiphosphat-abhängiger Enzyme für die Synthese enantiokomplementärer a-Hydroxyketone: Charakterisierung von MenD aus Bacillus subtilis
101 p. (2013)

Master Thesis

The twin-arginine translocation (Tat) pathway: Investigation of substrate-translocase interactions during Tat-dependent protein translocation in E. coli.
76 p. (2013)

Master Thesis

Expression und Analyse von Enzymen für die mikrobielle Produktion von Adipinsäure durch reverse β-Oxidation
90 p. (2013)

Master Thesis

Entwicklung von Werkzeugen zur Überexpression von Genen in Corynebacterium
82 p. (2013)

Bachelor Thesis

Intergenische Regionen für die genomische Integration heterologer Gene in Corynebacterium glutamicum - Plasmid-freie Produktion von Homocitrat
85 p. (2013)

Diploma Thesis

Untersuchung einer neuartigen Technologie zur Probenpräparation für die Metabolomanalyse
104 p. (2013)

Master Thesis

Markov Chain Monte Carlo Methods for Bayesian Inference and Viable Flux Volume Estimation of 13C Metabolic Network Models
168 p. (2013)

Master Thesis

Analyse des Glycogenstoffwechsels in Corynebacterium glutamicum mittels isotopisch- instationärer 13C-Stoffflussanalyse
119 p. (2013)

Master Thesis

Untersuchungen zur Induktion und Infektiosität des CGP3 Prophagen in Corynebacterium glutamicum
62 p. (2013)

Master Thesis

Characterisation of the Energy Balance in Corynebacterium glutamicum
103 p. (2013)

Master Thesis

Untersuchung der Bedeutung des Exometaboloms für die Systembiologie
81 p. (2013)

Master Thesis

Hybrid Bioprocess Modelling of an Industrially Relevant Pharmaceutical Production Process: Parameterisation, Sensitivity, and Robustness Analysis with Modelica
118 p. (2013)

Bachelor Thesis

Realisierung einer Webservice-basierten Remote Computing Lösung für den High-Performance Simulator 13CFLUX2
39 p. (2013)

Diploma Thesis

Monte-Carlo-Vergleich von Versuchsplanungs-Algorithmen für die Bioprozessoptimierung
93 p. (2013)

Proceedings 2013


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