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Open Source

Selected software, tools, data and models

OpenSimRoot

OpenSimRoot is an open-source, functional–structural plant model and mathematical description of root growth and function

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Leaf Angle Distribution Toolbox

The Leaf Angle Distribution Toolbox is a software package, which provides tools for the quantification of leaf surface properties within natural canopies via 3-d reconstruction from stereo images

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NMRooting

NMRooting can be used to derive Root Structural Architecture parameters from 3D MRI images of soil grown plant roots

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phenoVein

PhenoVein is dedicated to automated segmenting and analyzing leaf veins of images acquired with different imaging modalities (microscope, macro photography, etc.) including options for comfortable manual correction

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Plant Phenotypinbg Datasets

Collection of benchmark datasets in the context of plant phenotyping including annotated imaging data and suggestions of suitable evaluation criteria for plant/leaf segmentation, detection, tracking as well as classification and regression problems

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Impact analysis of open source publication of data sets

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There are further developments of IBG-2 at plant-image-analysis.org available but these are not regularley updated anymore.


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