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In refereed journals 2011

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Cellular automaton model for molecular traffic jams
Journal of statistical mechanics: theory and experiment P07007 (2011) [10.1088/1742-5468/2011/07/P07007]  GO

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Microscopic position and structure of a shock in CA184
Journal of physics / A 44, 445003 (2011) [10.1088/1751-8113/44/44/445003]  GO

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Backtracking of Colloids: A Multiparticle Collision Dynamics Simulation Study
The journal of physical chemistry / B 115, 14263 - 14268 (2011) [10.1021/jp205084u]  GO

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Semiflexible polymer conformation, distribution and migration in microcapillary flows
Journal of physics / Condensed matter 23, 184117 (2011) [10.1088/0953-8984/23/18/184117]  GO


Torque-induced deformations of charged elastic DNA rods: thin helices, loops, and precursors of DNA supercoiling
Journal of biological physics 37, 227 - 238 (2011) [10.1007/s10867-010-9211-7]  GO


Looping charged elastic rods: applications to protein-induced DNA loop formation
European biophysics journal 40, 69 - 80 (2011) [10.1007/s00249-010-0628-5]  GO


DNA-DNA sequence homology recognition: physical mechanisms and open questions
Journal of molecular recognition 24, 283 - 287 (2011) [10.1002/jmr.1050]  GO


DNA Cyclization: Suppression or Enhancement by Electrostatic Repulsions?
The journal of physical chemistry / B 115, 4286 - 4294 (2011) [10.1021/jp2003479]  GO


Electrostatic interactions in biological DNA-related systems
Physical Chemistry Chemical Physics 13, 9942 - 9968 (2011) [10.1039/c0cp02796k]  GO

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Polyelectrolyte adsorption onto oppositely charged interfaces: unified approach for plane, cylinder, and sphere
Physical Chemistry Chemical Physics 13, 11686 - 1693 (2011) [10.1039/c1cp20749k]  GO

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Response to Comment on Article: Hydrodynamics of Sperm Cells Near Surfaces
Biophysical journal 100, 2321 - 2324 (2011) [10.1016/j.bpj.2011.03.016]  GO

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Wall Shear Stress-Based Model for Adhesive Dynamics of Red Blood Cells in Malaria
Biophysical journal 100, 2084 - 2093 (2011) [10.1016/j.bpj.2011.03.027]  GO

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Quantifying the biophysical characteristics of Plasmodium-falciparum-parasitized red blood cells in microcirculation
Proceedings of the National Academy of Sciences of the United States of America 108, 35 - 39 (2011) [10.1073/pnas.1009492108]  GO

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Multiscale Modeling of Red Blood Cell Mechanics and Blood Flow in Malaria
PLoS Computational Biology 7, (2011) [10.1371/journal.pcbi.1002270]  GO

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Predicting human blood viscosity in silico
Proceedings of the National Academy of Sciences of the United States of America 108, 11772 - 11777 (2011) [10.1073/pnas.1101210108]  GO

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Dynamic self-assembly and directed flow of rotating colloids in microchannels
Physical review / E 84, 031404 (2011) [10.1103/PhysRevE.84.031404]  GO

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Bilayers Connected by Threadlike Micelles in Amphiphilic Mixtures: A Self-Consistent Field Theory Study
Langmuir 27, 3416 - 3423 (2011) [10.1021/la200138b]  GO

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Current symmetries for particle systems with several conservation laws
Journal of statistical physics 145, (2011) [10.1007/s10955-011-0341-5]  GO

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Massively parallelized replica-exchange simulations of polymers in GPUs
Computer physics communications 182, 1638 - 1644 (2011) [10.1016/j.cpc.2011.04.012]  GO

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Spindles and active vortices in a model of confined filament-motor mixtures
BMC Biophysics 4, (2011) [10.1186/2046-1682-4-18]  GO

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Approach to equilibrium of diffusion in a logarithmic potential
Physical review / E 84, 041111 (2011) [10.1103/PhysRevE.84.041111]  GO

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Tumbling of polymers in semidilute solution under shear flow
epl: a letters journal exploring the frontiers of 93, 54004 (2011) [10.1209/0295-5075/93/54004]  GO

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Chain Dynamics of Ring and Linear Polyethylene Melts from Molecular Dynamics Simulations
Macromolecules 44, 2311 - 2315 (2011) [10.1021/ma102659x]  GO

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Mesoscale hydrodynamic modeling of a colloid in shear-thinning viscoelastic fluids under shear flow
The journal of chemical physics 135, 134116 (2011) [10.1063/1.3646307]  GO

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Hierarchies in nucleation transitions
Computer physics communications 182, 1937 - 1940 (2011) [10.1016/j.cpc.2010.11.015]  GO

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Thermodynamics of polymer adsorption to a flexible membrane
Physical review / E 84, 031803 (2011) [10.1103/PhysRevE.84.031803]  GO

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Near-surface structure of a bicontinuous microemulsion with a transition region
Physical review / E 83, 030401 (2011) [10.1103/PhysRevE.83.030401]  GO

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Time-dependent and outflow boundary conditions for Dissipative Particle Dynamics
Journal of computational physics 230, 3765 - 3779 (2011) [10.1016/j.jcp.2011.02.003]  GO

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Deformation and clustering of red blood cells in microcapillary flows
Soft matter 7, 10967 - 10977 (2011) [10.1039/c1sm05794d]  GO

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Adsorption of finite polymers in different thermodynamic ensembles
Computer physics communications 182, 1961 - 1965 (2011) [10.1016/j.cpc.2010.12.016]  GO

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Mean bubble formation time in DNA denaturation
epl: a letters journal exploring the frontiers of 96, 68003 (2011) [10.1209/0295-5075/96/68003]  GO

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Predicting dynamics and rheology of blood flow: A comparative study of multiscale and low-dimensional models of red blood cells
Microvascular research 82, 163 - 170 (2011) [10.1016/j.mvr.2011.05.006]  GO

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Loss of erdodicity in the transition from quenched to annealed disorder in a finite kinetic Ising model
Journal of statistical physics 142, 984 - 999 (2011) [10.1007/s10955-011-0143-9]  GO

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Transition probabilities and dynamic structure factor in the ASEP conditioned on strong flux
Journal of statistical physics 142, 627 - 639 (2011) [10.1007/s10955-011-0137-7]  GO

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Large deviation functions in a system of diffusing particles with creation and annihilation
Physical review / E 84, 021131 (2011) [10.1103/PhysRevE.84.021131]  GO

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Generalized Green Functions and current correlations in the TASEP
Journal of statistical physics 142, 754 - 791 (2011) [10.1007/s10955-011-0133-y]  GO

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Dynamics of a polymer chain confined in a membrane
The European physical journal / E 34, 46 (2011) [10.1140/epje/i2011-11046-3]  GO


Helicopter rotation and smectic-isotropic coexistence of strongly attractive rods
Physical review / E 83, 040701 - 040701 (2011) [10.1103/PhysRevE.83.040701]  GO

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Advanced multicanonical Monte Carlo methods for efficient simulations of nucleation processes of polymers
Journal of computational physics 230, 4454 - 4465 (2011) [10.1016/j.jcp.2011.02.018]  GO

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Nonequilibrium Forces between Dragged Ultrasoft Colloids
Physical review letters 107, 158301 (2011) [10.1103/PhysRevLett.107.158301]  GO

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Non-Gaussian athermal fluctuations in active gels
Soft matter 7, 3234 - 239 (2011) [10.1039/c0sm00925c]  GO

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A Monte Carlo study of C(70) molecular motion in C(70)@SWCNT peapods
Carbon 49, 2007 - 2021 (2011) [10.1016/j.carbon.2011.01.027]  GO

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Compression, crumpling and collapse of spherical shells and capsules
New journal of physics 13, 045020 (2011) [10.1088/1367-2630/13/4/045020]  GO

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Adsorption of polymers at nanowires
Computer physics communications 182, 1928 - 1931 (2011) [10.1016/j.cpc.2010.11.007]  GO

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Simulations of thermophoretic nanoswimmers
Physical review / E 84, 061401 (2011) [10.1103/PhysRevE.84.061401]  GO


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