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NIC Series Volume 33:
Parallel Computing: Current & Future Issues of High-End Computing
Proceedings of the International Conference ParCo 2005
G.R. Joubert, W.E. Nagel, F.J. Peters,
O. Plata, P. Tirado, E. Zapata (Editors)
ISBN 3-00-017352-8
October 2006, 930 pages
PDF (57 MB)
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Invited Papers
Supporting Large Scale Medical and Scientific Datasets
U. Catalyurek, S. Hastings, K. Huang, V.S. Kumar, T. Kurc, S. Langella, S. Narayanan, S. Oster, T. Pan, B. Rutt, X. Zhang, J.H. Saltz
Periscope: Advanced Techniques for Performance Analysis
M. Gerndt, K. Fürlinger, E. Kereku
The Mitosis Speculative Multithreaded Architecture
C. Madriles, C. García Quiñones, J. Sánchez, P. Marcuello, A. Gonzáles
Grid Computing
A Paradigm for Allocating Parallel Application Tasks to Heterogeneous Computing Resources on the Grid
B. Arafeh, K. Day, A. Touzene
Science Experimental Grid Laboratory (SEGL) Dynamical Parameter Study in Distributed Systems
N. Currle-Linde, U. Küster, M. Resch, B. Risio
On Scheduling in UNICORE - Extending the Web Services Agreement based Resource Management Frramework
A. Streit, O. Wäldrich, P. Wieder, W. Ziegler
A Framework for Dynamic Adaptation of Parallel Components
J. Buisson, F. André, J.-L. Pazat
Towards a Distributed Scalable Data Service for the Grid
M. Aldinucci, M. Danelutto, G. Giaccherini, M. Torquati, M. Vanneschi
eNANOS: Coordinated Scheduling in Grid Environments
I. Rodero, F. Guim, J. Corbalán, J. Labarta
Parallel Program/Component Adaptivity Management
M. Aldinucci, F. André, J. Buisson, S. Campa, M. Coppola, M. Danelutto, C. Zoccolo
Load Balancing Support for Grid-enabled Applications
S. Rips
NewsGrid: Infrastructure and Services
S. Geisler, G.R. Joubert
Provision of Fault Tolerance with Grid-enabled and SLA-aware Resource Management Systems
F. Heine, M. Hovestadt, O. Kao, A. Keller
Air Pollution Forecast on the HUNGRID Infrastructure
R. Lovas, J. Patvarczki, P. Kacsuk, I. Lagzi, T. Turányi, L. Kullmann, L. Haszpra, R. Mészáros, A. Horányi, A. Benczura, Gy. Lendvay
Distributed Shared Memory in a Grid Environment
J.P. Ryan, B.A. Coghlan
Hierarchical and Reliable Multicast Communication for Grid Systems
N. Ranaldo, G. Tretola, E. Zimeo
Building Interoperable Grid-aware ASSIST Applications via Web Services
M. Aldinucci, M. Danelutto, A. Paternesi, R. Ravazzolo, M. Vanneschi
Performance Evaluation & Analysis
Performance Analysis of Parallel Applications with KappaPI2
J. Jorba, T. Margalef, E. Luque
A Comparative Evaluation of Two Techniques for Predicting the Performance of Dynamic Enterprise Systems
D.A. Bacigalupo, S.A. Jarvis, L. He, D.P. Spooner, D. Pelych, G.R. Nudd
Scheduling for Heterogeneous Networks of Computers with Persistent Fluctuation of Load
R. Higgins, A. Lastovetsky
Analysis and Optimization of Yee_Bench Using Hardware Performance Counters
U. Andersson, P. Mucci
Holistic Hardware Counter Performance Analysis of Parallel Programs
B.J.N. Wylie, B. Mohr, F. Wolf
Ring Algorithms on Heterogeneous Windows-based Clusters with Various Message Passing Environments
A. Clematis, A. Corana
Phase-Based Parallel Performance Profiling
A.D. Malony, S.S. Shende, A. Morris
Tracing the Cache Behavior of Data Structures in Fortran Applications
L. Barabas, R. Müller-Pfefferkorn, W.E. Nagel, R. Neumann
Algorithms
A Parallel Variant of the Gram-Schmidt Process with Reorthogonalization
V. Hernández, J.E. Román, A. Tomás
Auto-Optimization of Linear Algebra Parallel Routines: The Cholesky Factorization
L.-P. García, J. Cuenca, D. Giménez
A Parallel Algebraic Multigrid Preconditioner Using Algebraic Multicolor Ordering for Magnetic Finite Element Analyses
T. Mifune, N. Obata, T. Iwashita, M. Shimasaki
Parallel Newton-Type Iterative Methods Based in ILU Factorizations
J. Arnal, H. Migallón, V. Migallón, J. Penadés
Parallel Algorithm for Nonlinearly Unconstrained Optimization Based in Parametric Trees
I. Pardines, D.E. Singh, F.F. Rivera
Parallel Global Optimisation for Oil Reservoir Modelling
S. Gómez, N. del Castillo
Parallelization of an Algorithm for Finding Facility Locations for an Entering Firm Under Delivered Pricing
J.L. Redondo, I. García, P.M. Ortigosa, B. Pelegrín, P. Fernández
Concurrent Parallel Shortest Path Computation
D. Nussbaum, J.-R. Sack, H. Ye
OpenMP Parallelizations of Viswanathan and Bagchi's Algorithm for the Two Dimensional Cutting Stock Problem
G. Miranda Valladares, C. León Hernández
A Parallel Adaptive Algorithm to Improve Precision of Time Series Identification
J.A. Gómez, M.A. Vega, J.M. Sánchez, J.M. Granado
Towards Robustness in Parallel SAT Solving
W. Blochinger
Asynchronous Iterative Computations with Web Information Retrieval Structures: The PageRank Case
G. Kollias, E. Gallopoulos, D. Szyld
Solving Real Life Applications With High Accuracy
C.A. Hölbig, P.S. Morandi Jr., D.M. Claudio, T.A. Diverio
Improving Ease of Use in BLACS and PBLAS with Python
T. Drummond, V. Galiano, V. Migallón, J. Penadés
Parallelization of GSL on Clusters of Symmetric Multiprocessors
J. Aliaga, F. Almeida, J.M. Badía, S. Barrachina, V. Blanco, M. Castillo, R. Mayo, E.S. Quintana, G. Quintana, C. Rodríguez, F. de Sande, A. Santos
Simulations
Parallel Program Complex for High Reynolds Unsteady Flow Simulation
B.N. Chetverushkin, E.V. Shilnikov
Data Structures and Mesh Processing in Parallel CFD Project GIMM
B.N. Chetverushkin, V.A. Gasilov, S.V. Polyakov, M.V. Iakobovski, E.L. Kartasheva, A.S. Boldarev, A.S. Minkin
Radiative Gas Dynamics Parallel Computing Using Unstructured Meshes
B.N. Chetverushkin, V.A. Gasilov, O.G. Olkhovskaya, S.V. D'yachenko, E.L. Kartashova, A.S. Boldarev, V.V. Valko
Performance Analysis and Visualization of the N-Body Tree Code PEPC on Massively Parallel Computers
P. Gibbon, W. Frings, S. Dominiczak, B. Mohr
Experiments with a Monte Carlo Simulation of Space Cosmic Particles Detector
F. Almeida, F. de Sande, C. Delgado, R. García-López
Parallel Simulation of Tsunamis Using a Hybrid Software Approach
X. Cai, G.K. Pedersen, H.P. Langtangen, S. Glimsdal
Parallel Simulations of Underground Flow in Porous and Fractured Media
A. Beaudoin, J.R. De Dreuzy, J. Erhel, H. Mustapha
A Parallel Software for a Saltwater Intrusion Problem
E. Canot, C. de Dieuleveult, J. Erhel
A High-Performance Parallel Device Simulator for High Electron Mobility Transistors
N. Seoane, A.J. García-Loureiro, K. Kalna, A. Asenov
Real-Time Simulation for Laser-Tissue Interaction Model
L.F. Romero, O. Trelles, M.A. Trelles
Computer Simulation of the Acoustic Impedance of Modern Orchestral Horns
A. Benoit, J.P. Chick
Parallelization of the C++ Navier-Stokes Solver DROPS with OpenMP
C. Terboven, A. Spiegel, D. an Mey, S. Gross, V. Reichelt
Optimization of an Octree-based 3-D Parallel Meshing Algorithm for the Simulation of Small-Feature Semiconductor Devices
J.J. Pombo, M. Aldegunde, A.J. García-Loureiro
Large Scale Simulation of Ideal Quantum Computers on SMP-Clusters
G. Arnold, T. Lippert, N. Pomplun, M. Richter
Cluster Computing
Adaptive Selection of Communication Methods to Optimize Collective MPI Operations
O. Hartmann, M. Kühnemann, T. Rauber, G. Rünger
Fault Tolerant Master-Worker over a Multi-Cluster Architecture
J. Rodrigues de Souza, E. Argollo, A. Duarte, D. Rexachs, E. Luque
A Distributed Scheme for Fault-Tolerance in Large Clusters of Workstations
A. Duarte, D. Rexachs, E. Luque
An Automated Approach to Improve Communication-Computation Overlap in Clusters
L. Fishgold, A. Danalis, L. Pollock, M. Swany
I/O & Databases
QoS-aware Query Processing in Cluster-based Image Databases
U. Rerrer, O. Kao
A New Algorithm for Join Processing with the Internet Transfer Delays
K. Imasaki, S. Dandamudi
Comparing Two Parallel File Systems: PVFS and FSDDS
J. Buenabad-Chávez, S. Domínguez-Domínguez
pCFS: A Parallel Cluster File System
P.A. Lopes, P.D. Medeiros
Parallel I/O Optimization for an Air Pollution Model
D.E. Singh, F. García, J. Carretero
A Parallel Data Management Layer for Data Mining
M. Coppola, P. Pesciullesi, L. Presti, R. Ravazzolo, M. Vanneschi
Compiler Techniques
Reducing Cache Misses by Loop Reordering
E. Herruzo, G. Bandera, E.L. Zapata, O. Plata
Performance Evaluation of Barrier Techniques for Distributed Tracing Garbage Collectors
J.M. Velasco, D. Atienza, K. Olcoz, F. Catthoor
A New Strategy for Shape Analysis Based on Coexistent Links Sets
A. Tineo, F. Corbera, A. Navarro, R. Asenjo, E.L. Zapata
Optimal Tile Size Selection Guided by Analytical Models
B.B. Fraguela, M.G. Carmueja, D. Andrade
Pack Transposition: Enhancing Superword Level Parallelism Exploitation
C. Tenllado, L. Piñuel, M. Prieto, F. Catthoor
Applications
High Volume Colour Image Processing with Massively Parallel Embedded Processors
J. Jacobs, W. Bond, R. Pouls, G.J.M. Smit
Parallel Endmember Extraction Techniques Applied to a Self-Organizing Neural Network for Hyperspectral Image Classification
D. Valencia, A. Plaza, R.M. Pérez, M.C. Cantero, P. Martínez, J. Plaza
JPEG2000 Optimization in General Purpose Microprocessors
C. García, C. Tenllado, L. Piñuel, M. Prieto
A Parallel IMAGE Processing Server for Distributed Applications
A. Clematis, D. D'Agostino, A. Galizia
A Speculative Parallel Algorithm for Self-Organizing Maps
C. García, M. Prieto, A. Pascual-Montano
Genomic-Scale Analysis of DNA Words of Arbitrary Length by Parallel Computation
X.Y. Yang, A. Ripoll, V. Arnau, I. Marín, E. Luque
Parallel Implementation of SEMPHY - a Structural EM Algorithm for Phylogenetic Reconstruction
E. Li, Z. Ouyang, X. Deng, Y. Zhang, W. Chen
Exploiting Parallelism on Irregular Applications Using the GPU
M. Ujaldón, J.H. Saltz
Biomedical and Civil Engineering Experiences Using Grid Computing Technologies
J.M. Alonso, V. Hernández, G. Moltó
Parallel Compression of 3D Meshes for Efficient Distributed Visualization
A. Clematis, D. D'Agostino, V. Gianuzzi
A Parallel Implementation of a 3D Reconstruction Algorithm for Real-Time Vision
J. Falcou, K. Sérot, T. Chateau, F. Jurie
Languages
Using eSkel to Implement the Multiple Baseline Stereo Application
A. Benoit, M. Cole, S. Gilmore, J. Hillston
A Java/Jini Framework Supporting Stream Parallel Computations
M. Danelutto, P. Dazzi
Architecture
Massively Parallel MIMD Architecture Achieves High Performance in a Spam Filter
O.R. Birkeland, M. Nedland, O. Snøve Jr.
Implementing Critical Sections with the Shared Explicit Cache System in the Shared Memory Parallel Architectures
T. Madajczak, H. Krawczyk
Scheduling
A New Genetic Convex Clustering Algorithm for Parallel Time Minimization with Large Communication Delays
J.E.P. Sanchez, D. Trystram
Scheduling issues on IBM p690: Performance Analysis with the PARbench Environment
H. Dietze, W.E. Nagel, B. Trenkler
Minisymposium - Bioinformatics
Implementation of Anisotropic Nonlinear Diffusion for Filtering 3D Images in Structural Biology on SMP Clusters
S. Tabik, E.M. Garzón, I. García, J.J. Fernández
Services Integration and Task-scheduling in Bioinformatics Grids
S. Ramírez, E. de-Andrés, I. Navas-Delgado, A.J. Pérez, J. Aldana, O. Trelles
Minisymposium - Network-on-Chip
Networks on Chips: A Synthesis Perspective
F. Angiolini, P. Meloni, D. Bertozzi, L. Benini, S. Carta, L. Raffo
NoC Emulation on FPGA: HW/SW Synergy for NoC Features Exploration
N. Genko, D. Atienza, G. De Micheli
Distributed Congestion Control for Packet Switched Networks on Chip
T. Marescaux, A. Rångevall, V. Nollet, A. Bartic, H. Corporaal
Versatile FPGA-Based Functional Validation Framework for Networks-on-Chip Interconnections Designs
J.B. Perez Ramas, D. Atienza, M. Peón, I. Magán, J.M. Mendías, R. Hermida
A New Model for NoC-based Distributed Heterogeneous System Design
F. Rincón, F. Moya, J. Barba, D. Villa, F.J. Villanueva, J.C. López
Minisymposium - Skeletons
Integrating MPI-Skeletons with Web Services for Grid Programming
J. Dünnweber, A. Benoit, M. Cole, S. Gorlatch
Scalable Farms
M. Poldner, H. Kuchen
"Second-generation" Skeleton Systems
M. Danelutto
Domain Decomposition and Skeleton Programming with OCamlP3l
F. Clément, V. Martin, A. Vodicka, R. Di Cosmo, P. Weis
Mondriaan sparse matrix partitioning for attacking cryptosystems by a parallel block Lanczos algorithm - a case study
R.H. Bisseling, I. Flesch
Efficient representation and parallel computation of string-substring longest common subsequences
A. Tiskin
Skeletons for Recursively Unfolding Process Topologies
J. Berthold, R. Loogen
Towards Improving Skeletons in Eden
M. Hidalgo-Herrero, Y. Ortega-Mallén, F. Rubio
Reasoning About Skeletons in Eden
R. Peña, C.M. Segura
Merging Compositions of Array Skeletons in SAC
C. Grelck, S.-B. Scholz
Minisymposium - Tools
Scalability of Visualization and Tracing Tools
J. Labarta, J. Giménez, E. Martínez, P. Gonzáles, H. Servat, G. Llort, X. Aguilar
Performance comparison and optimization: Case studies using BenchIT
R. Schöne, G. Juceland, W.E. Nagel, S. Pflüger, R. Wloch
Performance Analysis of One-sided Communication Mechanisms
B. Mohr, A. Kühnal, M.-A. Hermanns, F. Wolf
Runtime Checking of MPI Applications with MARMOT
B. Krammer, M.S. Müller, M.M. Resch
Automated Correctness Analysis of MPI Programs with Intel Message Checker
V. Samofalov, V. Krukov, B. Kuhn, S. Zheltov, A. Konovalov, J. DeSouza
The MPI/SX Collectives Verification Library
J.L. Träff, J. Worringen
Capturing Petascale Application Characteristics with the Sequoia Toolkit
J.S. Vetter, N. Bhatia, E.M. Grobelny, P.C. Roth
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