All Publications
Journal Article - Online First
Differential predictability of cognitive profiles from brain structure in older males and females
GeroScience -, - (2023) [10.1007/s11357-023-00934-y]
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Preprint
Reconciliation of weak pairwise spike-train correlations and highly coherent local field potentials across space
arXiv (2023) [10.48550/arXiv.1805.10235]
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Conference Presentation (Invited)
Estimating the primate cortical mesoconnectome to predict resting-state activity via large-scale simulations
Bernstein Conference Workshop, BerlinBerlin, Germany, 26 Sep 2023 - 29 Sep 2023
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Poster (After Call)
Data and metadata acquisition workflows as a basis for collaborative science
Bernstein Conference 2023, BerlinBerlin, Germany, 26 Sep 2023 - 29 Sep 2023
[10.12751/NNCN.BC2023.195]
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Poster (After Call)
Relating the orientation of cortical traveling waves and co-occurring spike patterns
Bernstein Conference 2023, bernstein2023, BerlinBerlin, Germany, 26 Sep 2023 - 30 Sep 2023
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Poster (After Call)
A method for detecting spatio-temporal patterns of neuronal spikes based on principal component analysis
Bernstein Conference 2023, BerlinBerlin, Germany, 26 Sep 2023 - 29 Sep 2023
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Poster (After Call)
Cortical wave dynamics across visual areas of the macaque monkey during an instructed, free-viewing, visuomotor task
Bernstein Conference, BerlinBerlin, Germany, 27 Sep 2023 - 29 Sep 2023
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Book/Dissertation / PhD Thesis
Gradient-Free Optimization of Artificial and Biological Networks using Learning to Learn
Jülich : Forschungszentrum Jülich GmbH, Central Library, Publishing House, IAS Series 55, 149 pp. (2023) [10.34734/FZJ-2023-03569] = Dissertation, RWTH Aachen, 2023
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Conference Presentation (After Call)
Exploring the diversity of cortical wave activity with a unifying workflow approach
Concluding Event of the Human Brain Project, JülichJülich, Germany, 12 Sep 2023 - 13 Sep 2023
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Journal Article
Runtime Construction of Large-Scale Spiking Neuronal Network Models on GPU Devices
Applied Sciences 13(17), 9598, 29 pages (2023) [10.3390/app13179598]
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Preprint
Runtime Construction of Large-Scale Spiking Neuronal Network Models on GPU Devices
arXiv (2023) [10.34734/FZJ-2023-03232]
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Conference Presentation (After Call)
Accelerating Neuronal Network Construction through Dynamic GPU Memory Instantiation
NEST Conference, VirtualVirtual, Germany, 15 Jun 2023 - 16 Jun 2023
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Poster (After Call)
JuHarmonize: Leakage-free data harmonization
Organization for Human Brain Mapping (OHBM), MontrealMontreal, Canada, 22 Jul 2023 - 26 Jul 2023
[10.34734/FZJ-2023-03220]
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Poster (After Call)
Whole-brain dynamical modeling for classification of Parkinson's disease
Organization for Human Brain Mapping (OHBM), MontrealMontreal, Canada, 22 Jul 2023 - 26 Jul 2023
[10.34734/FZJ-2023-03046]
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Poster (After Call)
Cofound-Leakage: Confound Removal In Machine Learning Leads To Leakage
Organization for Human Brain Mapping (OHBM), MontrealMontreal, Canada, 22 Jul 2023 - 26 Jul 2023
[10.34734/FZJ-2023-03045]
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Poster (After Call)
Predicting Executive Functioning from Brain Networks: Modality Specificity and Age Effects
Organization for Human Brain Mapping (OHBM), MontrealMontreal, Canada, 22 Jul 2023 - 26 Jul 2023
[10.34734/FZJ-2023-03043]
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Lecture (After Call)
Using open tools to build efficient workflows for data access, management and analysis
Lecture at CNS 2023 (Leipzig, Germany), 15 Jul 2023 - 15 Jul 2023
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Journal Article
The influence of bilingualism on gray matter volume in the course of aging: a longitudinal study
Frontiers in aging neuroscience 15, 1193283 (2023) [10.3389/fnagi.2023.1193283]
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Poster (Other)
The siibra toolsuite – making human brain organization accessible across scales and modalities
Organization for Human Brain Mapping, OHBM, MontréalMontréal, Canada, 22 Jul 2023 - 26 Jul 2023
[10.34734/FZJ-2023-02970]
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Poster (After Call)
Detection and Mitigation of Artifacts in Massively Parallel Recordings
CNS*2023, RWTH AachenLeipzig, RWTH Aachen, Germany, 15 Jul 2023 - 19 Jul 2023
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Conference Presentation (After Call)
Towards classification of spatio-temporal wave patterns based on principal component analysis
32nd Annual Computational Neuroscience Meeting, CNS2023, LeipzigLeipzig, Germany, 15 Jul 2023 - 19 Jul 2023
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Poster (After Call)
Anatomical Network Model with Embedded Synfire Chains is Consistent with Cortical Spatio-Temporal Spike Patterns
32nd Annual Computational Neuroscience Meeting, CNS 2023, LeipzigLeipzig, Germany, 15 Jul 2023 - 26 Jul 2023
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Conference Presentation (Invited)
A mesoscopic layered cortical network model for spiking activity and local field potentials
32nd Annual Computational Neuroscience Meeting, CNS*2023, LeipzigLeipzig, Germany, 15 Jul 2023 - 19 Jul 2023
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Talk (non-conference) (Invited)
Primate brains in silico: Large-scale neural network simulations of macaque and human cortices
Donders Centre for Neuroscience seminar, Radboud UniversityNijmegen, Radboud University, Netherlands, 13 Jul 2023
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Poster (After Call)
Gradient free optimization of neuroscience models at different scales with L2L
HBP Summit 2023, MarseilleMarseille, France, 27 Mar 2023 - 31 Mar 2023
[10.34734/FZJ-2023-02678]
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Conference Presentation (Other)
Introduction to High Performance Computing
Life Science PhD Meeting, Medizinische Universität InnsbruckInnsbruck, Medizinische Universität Innsbruck, Austria, 12 Apr 2023 - 14 Apr 2023
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Conference Presentation (Other)
Vast parameter space exploration using Learning to Learn on EBRAINS
HBP Summit 2023, MarseilleMarseille, France, 27 Mar 2023 - 31 Mar 2023
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Journal Article
Using light and X-ray scattering to untangle complex neuronal orientations and validate diffusion MRI
eLife 12, e84024 (2023) [10.7554/eLife.84024]
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Conference Presentation (After Call)
Adaptable workflows for neural activity analysis in an open-source environment
International Forum on Neural Engineering & Brain Technologies, NBT, BerlinBerlin, Germany, 20 Jun 2023 - 21 Jun 2023
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Talk (non-conference) (Invited)
Collaborative Brain Wave Analysis Pipeline
HBP Fundraising Bootcamp, BrusselsBrussels, Belgium, 30 May 2023 - 31 May 2023
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Conference Presentation (Invited)
Tutorial: Modelling networks with NEST & Tutorial: Modelling cortical regions
EBRAINS Brain Simulation School 2023: Training on modelling neurons, circuits, and cognitive functions, Genoa, Marseille, Palma de Mallorca, BarcelonaGenoa, Marseille, Palma de Mallorca, Barcelona, Italy, France, Spain, 19 May 2023 - 24 May 2023
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Conference / Event
Plastic balanced random networks in NEST
Workgroup at Capo Caccia Neuromorphic Workshop, AlgheroAlghero, Italy, 30 Apr 2023 - 14 May 2023
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Conference Presentation (Invited)
Large-scale spiking neural network simulations of human and non-human primate cortices
In2PrimateBrains Thematic Workshop 2, HeraklionHeraklion, Greece, 8 May 2023 - 12 May 2023
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Poster (Other)
Event-driven eligibility propagation in large-scale spiking neural networks
SMHB General Assembly, JülichJülich, Germany, 4 Apr 2023 - 5 Apr 2023
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Poster (After Call)
Interaction-based phenotyping as observer-independent measures of social impairments across psychiatric disorders
General Assembly of the Joint Lab Supercomputing and Modeling for the Human Brain (SMHB), JülichJülich, Germany, 4 Apr 2023 - 5 Apr 2023
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Lecture (Invited)
Processing electrophysiological activity data using Neo, Elephant and Alpaca
Lecture at SMHB General Assembly (Germany),
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Poster (After Call)
Brain function - neurotransmitter co localization: Effects of aging and deviations in Parkinson’s disease
General Assembly of the Joint Lab Supercomputing and Modeling for the Human Brain (SMHB), JülichJülich, Germany, 4 Apr 2023 - 5 Apr 2023
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Poster (After Call)
Is resting state fMRI better than individual characteristics at predicting cognition?
General Assembly of the Joint Lab Supercomputing and Modeling for the Human Brain (SMHB), JülichJülich, Germany, 4 Apr 2023 - 5 Apr 2023
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Journal Article - Online First
Hippocampal metabolic subregions and networks: Behavioral, molecular, and pathological aging profiles
Alzheimer's and dementia -, alz.13056 (2023) [10.1002/alz.13056]
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Conference Presentation (Invited)
Improving rigor and knowledge transfer for analysis workflows in electrophysiology
SMHB General Assembly, JülichJülich, Germany, 5 Apr 2023 - 5 Apr 2023
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Conference Presentation (Invited)
Large-scale spiking simulations of cortical resting-state activity
SMHB General Assembly, JülichJülich, Germany, 4 Apr 2023 - 5 Apr 2023
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Poster (After Call)
Generalizability in sex classification models
General Assembly of the Joint Lab Supercomputing and Modeling for the Human Brain (SMHB), JülichJülich, Germany, 4 Apr 2023 - 5 Apr 2023
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Poster (After Call)
The Confound Continuum: A 2D confounder assessment for AI in precision medicine
General Assembly of the Joint Lab Supercomputing and Modeling for the Human Brain (SMHB), JülichJülich, Germany, 4 Apr 2023 - 5 Apr 2023
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Preprint
Multi-scale spiking network model of human cerebral cortex
bioRxiv beta (2023) [10.1101/2023.03.23.533968v1]
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Conference Presentation (Invited)
From structure to activity and back in spiking cortical models
Networks of spiking neurons, ParisParis, France, 27 Mar 2023 - 31 Mar 2023
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Conference Presentation (Other)
Cellular, connectional and molecular heterogeneity in a large-scale computational model of the human cerebral cortex
SPP 2041 Annual Status Meeting, FrankfurtFrankfurt, Germany, 1 Mar 2023 - 2 Mar 2023
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Poster (After Call)
Gradient free optimization of neuroscience models at different scales with L2L
CASA Kick off, JuelichJuelich, Germany, 26 Jan 2023 - 26 Jan 2023
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Talk (non-conference) (Invited)
Simulating monkey and human cortices at cellular resolution
M-BIC Lecture, Maastricht UniversityMaastricht, Maastricht University, Netherlands, 6 Feb 2023 - 6 Feb 2023
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Journal Article
Signal denoising through topographic modularity of neural circuits
eLife 12, e77009 (2023) [10.7554/eLife.77009]
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Conference Presentation (Invited)
Unifying the spiking and large-scale dynamics of cortex through simulation
Atelier Neurosciences Computationnelles Aviesan, ParisParis, France, 13 Jan 2023 - 13 Jan 2023
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Journal Article
Evaluating the statistical similarity of neural network activity and connectivity via eigenvector angles
Biosystems 223, 104813 (2023) [10.1016/j.biosystems.2022.104813] special issue: "Selected Papers from the 14th International Neural Coding Workshop, Seattle, Washington" (0303-2647)
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Journal Article
Classification and prediction of cognitive performance differences in older age based on brain network patterns using a machine learning approach
Network neuroscience 7(1), 122–147 (2023) [10.1162/netn_a_00275]
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Poster (Other)
Eligibility propagation in large-scale neural networks
NIC Symposium, JülichJülich, Germany, 29 Sep 2022 - 30 Sep 2022
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Conference Presentation (Invited)
On concepts, correctness, and performance of network simulations
INCF Neuroinformatics Assembly 2022, virtualvirtual, virtual, 13 Sep 2022 - 13 Sep 2022
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Poster (After Call)
Tracking large-scale simulations through unified metadata handling
Helmholtz Metadata Collaboration Conference 2022, virtualvirtual, virtual, 5 Oct 2022 - 6 Oct 2022
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Talk (non-conference) (Invited)
User community requirements for driving innovation across Europe: JSC and SDL Neuroscience
HealthyCloud technical users workshop, Amsterdam, NetherlandsAmsterdam, Netherlands, Netherlands, 8 Dec 2022 - 9 Dec 2022
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Talk (non-conference) (Invited)
Artificial and biological learning
JULAB Entdeckerwoche 2022, JülichJülich, Germany, 26 Jul 2022
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Lecture (Other)
Porting code from Matlab to Python
Lecture at Jülich Supercomputing Centre - as part of the Training Programme of Forschungszentrum Jülich (Online, Online), 6 Oct 2022 - 7 Oct 2022
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Lecture (Other)
Simulating plasticity in morphologically detailed neural networks with Arbor
Lecture at Bernstein Conference Satellite Workshops 2022 (Berlin, Germany, Germany), 13 Sep 2022 - 14 Sep 2022
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Lecture (Outreach)
Young Researchers using EBRAINS for tomorrow's scientific challenges
Lecture at HBP outreach event series (Online, Online), 18 Jul 2022 - 19 Jul 2022
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Conference Presentation (Panel discussion)
Women at the interface between neuroscience and high performance computing
Women in Neuroscience Symposium 2022, TbilisiTbilisi, Rep of Georgia, 12 Aug 2022 - 14 Aug 2022
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Lecture (Invited)
Now you see it! Visualization and modeling tools for neuroscience on EBRAINS
Lecture at Workshop at the 6th HBP Student Conference (Innsbruck, online, Austria), 22 Feb 2022 - 25 Feb 2022
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Lecture (Invited)
Simulation of Biological Neuronal Networks
Lecture at University of Freiburg (Germany), 1 Aug 2022 - 5 Aug 2022
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Preprint
Phenomenological modeling of diverse and heterogeneous synaptic dynamics at natural density
arXiv (2022) [10.48550/ARXIV.2212.05354]
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Lecture (Invited)
Simulating spatially organized networks and plasticity with NEST
Lecture at 9th Baltic-Nordic Summer School on Neuroinformatics at Jagiellonian University (Krakow, Poland), 5 Jul 2022 - 5 Jul 2022
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Talk (non-conference) (Other)
Co-simulation in the Modular Science Framework, controlling complexity
Simulate with EBRAINS workshop, JülichJülich, Germany, 7 Nov 2022 - 10 Nov 2022
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Conference Presentation (Invited)
Challenges and opportunities for large-scale federated science and computing in the EU landscape
Braincomp2022 Computational Challenges of Connectivity, CetraroCetraro, Italy, 19 Sep 2022 - 22 Sep 2022
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Talk (non-conference) (Invited)
High level view EBRAINS and HBP
Young Researchers using EBRAINS for tomorrow's scientific challenges, GermanyGermany, 18 Jul 2022
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Lecture (Other)
The Web-based NEST Ecosystem on EBRAINS
Lecture at Austrian Neuroscience Association: EBRAINS TRAINING ON BRAIN ATLASES AND SIMULATION SERVICES (Austria), 16 Sep 2022 - 16 Sep 2022
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Talk (non-conference) (Invited)
The Atlas and Simulation Services on EBRAINS
Austrian Neuroscience Association EBRAINS TRAINING ON BRAIN ATLASES AND SIMULATION SERVICES, AustriaAustria, 16 Sep 2022
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Journal Article
Mapping cyto- and receptor architectonics to understand brain function and connectivity
Biological psychiatry 93(5), 471-479 (2022) [10.1016/j.biopsych.2022.09.014]
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Lecture (Invited)
Elephant: a data analysis frmework for electrophysiological activity data
Lecture at Simulate with EBRAINS (Virtual), 10 Nov 2022 - 10 Nov 2022
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Journal Article
Latency shortening with enhanced sparseness and responsiveness in V1 during active visual sensing
Scientific reports 12(1), 6021 (2022) [10.1038/s41598-022-09405-4]
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Journal Article
Exploring Parameter and Hyper-Parameter Spaces of Neuroscience Models on High Performance Computers With Learning to Learn
Frontiers in computational neuroscience 16, 885207 (2022) [10.3389/fncom.2022.885207]
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Lecture (Invited)
Large-scale spiking network models
Lecture at EITN Fall School (Paris, France), 24 Sep 2022 - 24 Sep 2022
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Conference Presentation (Invited)
Implementing the modular and long-tailed structure of cortex in large spiking models
Neuromorphic Algorithms 2022, NEAL2022, VolpriehausenVolpriehausen, Germany, 6 Sep 2022 - 8 Sep 2022
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Conference Presentation (Invited)
A career between continents
Women in Neuroscience Symposium 2022, Tbilisi/onlineTbilisi/online, Rep of Georgia, 12 Aug 2022 - 14 Aug 2022
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Journal Article
Fast Simulation of a Multi-Area Spiking Network Model of Macaque Cortex on an MPI-GPU Cluster
Frontiers in neuroinformatics 16, 883333 (2022) [10.3389/fninf.2022.883333]
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Journal Article
Comparing Surrogates to Evaluate Precisely Timed Higher-Order Spike Correlations
eNeuro 9(3), ENEURO.0505-21.2022 - (2022) [10.1523/ENEURO.0505-21.2022]
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Poster (After Call)
NEST is on the road to GPU integration
NEST Conference 2022, OnlineOnline, Germany, 23 Jun 2022 - 24 Jun 2022
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Lecture (Invited)
Simulating the resting-state activity of monkey and human cortices at cellular resolution
Lecture at 9th Baltic-Nordic Summer School on Neuroinformatics (Krakow, Poland), 5 Jul 2022 - 5 Jul 2022
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Poster (After Call)
beNNch – Finding Performance Bottlenecks of Neuronal Network Simulators
NEST Conference, virtualvirtual, Germany, 23 Jun 2022 - 24 Jun 2022
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Conference Presentation (Invited)
Simulating spatially organized networks with NEST
EBRAINS Workshop: Brain Activity across Scales and Species: Analysis of Experiments and Simulations, BASSES, RomeRome, Italy, 13 Jun 2022 - 15 Jun 2022
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Conference Presentation (Invited)
Multi-area full-density spiking network models of monkey and human cortices: from anatomy to resting-state dynamics
Brain Activity across Scales and Species: Analysis of Experiments and Simulations, BASSES, RomeRome, Italy, 13 Jun 2022 - 15 Jun 2022
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Journal Article
NNMT: Mean-Field Based Analysis Tools for Neuronal Network Models
Frontiers in neuroinformatics 16, 835657 (2022) [10.3389/fninf.2022.835657]
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Journal Article
Automated computation of nerve fibre inclinations from 3D polarised light imaging measurements of brain tissue
Scientific reports 12(1), 4328 (2022) [10.1038/s41598-022-08140-0]
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Conference Presentation (Other)
Cellular, connectional and molecular heterogeneity in a large-scale computational model of the human cerebral cortex
SPP-2041 Status Meeting, onlineonline, online, 29 Mar 2022 - 30 Mar 2022
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Journal Article
A Modular Workflow for Performance Benchmarking of Neuronal Network Simulations
Frontiers in neuroinformatics 16, 837549 (2022) [10.3389/fninf.2022.837549]
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Journal Article
Additional fiber orientations in the sagittal stratum—noise or anatomical fine structure?
Brain structure & function 227, 1331–1345 (2022) [10.1007/s00429-021-02439-w]
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Journal Article
Multimodal investigation of the association between shift work and the brain in a population-based sample of older adults
Scientific reports 12(1), 2969 (2022) [10.1038/s41598-022-05418-1]
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Journal Article
Cytoarchitectonic Maps of the Human Metathalamus in 3D Space
Frontiers in neuroanatomy 16, 837485 (2022) [10.3389/fnana.2022.837485]
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Journal Article
ConGen a simulator-agnostic visual language for definition and generation of connectivity in large and multiscale neural networks
Frontiers in neuroinformatics 15, 766697 (2022) [10.3389/fninf.2021.766697] special issue: "Neuroscience, Computing, Performance, and Benchmarks: Why It Matters to Neuroscience How Fast We Can Compute"
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Software
Neuronal Network Meanfield Toolbox (NNMT) 1.0.0
[10.5281/ZENODO.5779549]
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Preprint
A Modular Workflow for Performance Benchmarking of Neuronal Network Simulations
arXiv (2021)
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Preprint
A mean-field toolbox for spiking neuronal network model analysis
[10.1101/2021.12.14.472584]
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Talk (non-conference) (Other)
Simulating and analyzing the structural plasticity of the brain using HPC
JSC-Jahresabschlusskolloquium 2021, GermanyGermany, 16 Dec 2021
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Conference Presentation (Outreach)
Using EBRAINS for your use cases
Young Researchers Event 2021 EBRAINS for next-generation brain medicine, GermanyGermany, Germany, 27 May 2021 - 27 May 2021
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Talk (non-conference) (Other)
Simulation tools in EBRAINS
EBRAINS & IBRO Second Virtual Master Class on Brain Atlasing and Simulation Services, GermanyGermany, 2 Sep 2021 - 2 Sep 2021
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Talk (non-conference) (Other)
Simulation tools in EBRAINS
Group seminar, BelgiumBelgium, 1 Jul 2021 - 1 Jul 2021
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Talk (non-conference) (Other)
Simulation tools in EBRAINS
EBRAINS & IBRO First Virtual Master Class on Brain Atlasing and Simulation Services, GermanyGermany, 28 Jul 2021 - 28 Jul 2021
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Talk (non-conference) (Other)
Structural plasticity as a connectivity generation and optimization algorithm in neural networks
Group seminar, FreiburgFreiburg, Germany, 26 Nov 2021 - 26 Nov 2021
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Journal Article
Long-Term Desynchronization by Coordinated Reset Stimulation in a Neural Network Model With Synaptic and Structural Plasticity
Frontiers in physiology 12, 716556 (2021) [10.3389/fphys.2021.716556]
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On the influence of prior information evaluated by fully Bayesian criteria in a personalized whole-brain model of epilepsy spread
PLoS Computational Biology 17(7), e1009129 - (2021) [10.1371/journal.pcbi.1009129]
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Journal Article
Scatterometry Measurements With Scattered Light Imaging Enable New Insights Into the Nerve Fiber Architecture of the Brain
Frontiers in neuroanatomy 15, 767223 (2021) [10.3389/fnana.2021.767223]
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The many dimensions of human hippocampal organization and (dys)function
Trends in neurosciences 44(12), 977-989 (2021) [10.1016/j.tins.2021.10.003]
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Conference Presentation (Plenary/Keynote)
Cortical oscillations support sampling-based computations in spiking neural networks
ACAIN conference, GrasmereGrasmere, UK, 4 Oct 2021 - 8 Oct 2021
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Journal Article
Advanced brain aging in Parkinson’s disease is related to disease duration and individual impairment
Brain communications 3(3), fcab191 (2021) [10.1093/braincomms/fcab191]
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Conference Presentation (Plenary/Keynote)
Conditions for wave trains in spiking neural networks
NEST Conference 2021, onlineonline, online, 28 Jun 2021 - 29 Jun 2021
(2021)
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Conference Presentation (Plenary/Keynote)
Event-driven eligibility propagation in nest
virtual NEST Conference, OnlineOnline, Online, 28 Jun 2021 - 29 Jun 2021
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Contribution to a conference proceedings/Contribution to a book
Deep Learning-Supported Cytoarchitectonic Mapping of the Human Lateral Geniculate Body in the BigBrain
Brain-Inspired Computing / Amunts, Katrin (Editor)
4th International Workshop on Brain-Inspired Computing, CetraroCetraro, Italy, 15 Jul 2019 - 19 Jul 2019
Cham : Springer International Publishing, Lecture Notes in Computer Science 12339, 22 - 32 (2021) [10.1007/978-3-030-82427-3_2]
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Talk (non-conference) (After Call)
Optimizing Spiking Neural Networks with Learning to Learn
HDS-LEE Retreat 2021, RWTH AachenRWTH Aachen, Germany, 10 Jun 2021 - 11 Jun 2021
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ODE-toolbox 2.3
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Preprint
Contour Proposal Networks for Biomedical Instance Segmentation
Medical image analysis 102371 - (2022)
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Contribution to a conference proceedings
Scatterometry on whole brain sections using Scattered Light Imaging
2021 OSA Biophotonics Congress: Optics in the Life Sciences, VirtuellVirtuell, USA, 12 Apr 2021 - 16 Apr 2021
OSA Technical Digest (Optical Society of America) BTu1B.2 (2021)
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Conference Presentation (Invited)
Scatterometry on whole brain sections using Scattered Light Imaging
2021 OSA Biophotonics Congress: Optics in the Life Sciences, VirtuellVirtuell, USA, 12 Apr 2021 - 16 Apr 2021
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Journal Article
Genetic factors influencing a neurobiological substrate for psychiatric disorders
Translational Psychiatry 11(1), 192 (2021) [10.1038/s41398-021-01317-7]
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Journal Article
Scattered Light Imaging: Resolving the substructure of nerve fiber crossings in whole brain sections with micrometer resolution
NeuroImage 233, 117952 - (2021) [10.1016/j.neuroimage.2021.117952]
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Preprint
Cortical oscillations implement a backbone for sampling-based computation in spiking neural networks
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Poster (Other)
Event-driven updates of voltage-based learning rules
POF IV Kickoff, RWTH AachenJülich, RWTH Aachen, Germany, 29 Jan 2021 - 29 Jan 2021
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ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations
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Journal Article
Cortical reorganization after motor stroke: A pilot study on differences between the upper and lower limbs
Human brain mapping 42(4), 1013-1033 (2021) [10.1002/hbm.25275]
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Poster (After Call)
Processing capacity of recurrent spiking networks
Organisation For Computational Neuroscience - 29th Annual Computational Neuroscience Meeting, CNS2020, OnlineOnline, Online, 18 Jul 2020 - 23 Jul 2020
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Contribution to a conference proceedings/Contribution to a book
Ensemble Kalman Filter Optimizing Deep Neural Networks: An Alternative Approach to Non-performing Gradient Descent
Machine Learning, Optimization, and Data Science
The Sixth International Conference on Machine Learning, Optimization, and Data Science, LOD2020, SienaSiena, Italy, 19 Jul 2020 - 22 Jul 2020
Cham : Springer, Lecture Notes in Computer Science 12566, : 5th ed., 78-92 (2020) [10.1007/978-3-030-64580-9_7]
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Journal Article
Deep learning networks reflect cytoarchitectonic features used in brain mapping
Scientific Report 10, 22039 (2020) [10.1038/s41598-020-78638-y]
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ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations
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Journal Article
Age differences in predicting working memory performance from network-based functional connectivity
Cortex 132, 441 - 459 (2020) [10.1016/j.cortex.2020.08.012]
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Poster (Other)
Modeling Temporally Precise Spike Artefacts to Study Their Impact on Spike Correlation Analyses
Bernstein Conference 2020, BerlinBerlin, Germany, 29 Sep 2020 - 1 Oct 2020
[10.12751/NNCN.BC2020.0095]
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Conference Presentation (Outreach)
SimLab Neuroscience: Bernstein Facility for High Performance Simulation and Data Analytics
Bernstein Conference 2020, virtual Eventvirtual Event, Germany, 29 Sep 2020 - 1 Oct 2020
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Journal Article
Systematic Review and Meta-analysis: Resting State Functional Magnetic Resonance Imaging Studies of Attention-Deficit/Hyperactivity Disorder
Journal of the American Academy of Child and Adolescent Psychiatry 60(1), 61-75 (2020) [10.1016/j.jaac.2020.08.014]
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Journal Article
Hippocampus co-atrophy pattern in dementia deviates from covariance patterns across the lifespan
Brain 143(9), 2788 - 2802 (2020) [10.1093/brain/awaa222]
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Conference Presentation (Other)
Ensemble Kalman Filter optimizing Deep Neural Networks: An alternative approach to non-performing Gradient Descent
The Sixth International Conference on Machine Learning, Optimization, and Data Science, LOD2020, SienaSiena, Italy, 19 Jul 2020 - 22 Jul 2020
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Journal Article
Julich-Brain: A 3D probabilistic atlas of the human brain’s cytoarchitecture
Science 369(6506), 988-992 (2020) [10.1126/science.abb4588]
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Journal Article
Joint Multi-modal Parcellation of the Human Striatum: Functions and Clinical Relevance
Neuroscience bulletin 36(10), 1123-1136 (2020) [10.1007/s12264-020-00543-1]
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Poster (After Call)
Large-scale spiking network models of primate cortex as research platforms
29th Annual Computational Neuroscience Meeting, CNS*2020, onlineonline, online, 18 Jul 2020 - 22 Jul 2020
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ODE-toolbox: Automatic selection and generation of integration schemes for systems of ordinary differential equations
[10.5281/ZENODO.3822082]
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Journal Article
Conditions for wave trains in spiking neural networks
Physical review research 2(2), 023174 (2020) [10.1103/PhysRevResearch.2.023174]
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Journal Article
Influence of Processing Pipeline on Cortical Thickness Measurement
Cerebral cortex 30(9), 5014–5027 (2020) [10.1093/cercor/bhaa097]
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Journal Article
Executive functions predict verbal fluency scores in healthy participants
Scientific reports 10(1), 11141 (2020) [10.1038/s41598-020-65525-9]
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Journal Article
The Emerging Neuroscience of Social Punishment: Meta-Analytic Evidence
Neuroscience & biobehavioral reviews 113, 426-439 (2020) [10.1016/j.neubiorev.2020.04.011]
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Journal Article
Common and distinct brain activity associated with risky and ambiguous decision-making
Drug and alcohol dependence 209, 107884 - (2020) [10.1016/j.drugalcdep.2020.107884]
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NESTML 3.1
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Poster (Other)
Multi-area model of macaque cortex as a scaffold model and workflow testcase
Human Brain Project Summit 2020, AthensAthens, Greece, 3 Feb 2020 - 6 Feb 2020
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Journal Article
Toward a High-Resolution Reconstruction of 3D Nerve Fiber Architectures and Crossings in the Brain Using Light Scattering Measurements and Finite-Difference Time-Domain Simulations
Physical review / X 10(2), 021002 (2020) [10.1103/PhysRevX.10.021002]
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LIF Meanfield Tools
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Wave trains
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NEST 2.20.0
[10.5281/ZENODO.3605514]
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Poster (After Call)
NEST3 and NESTML: You'll love the new NEST user experience
Human Brain Project Summit 2020, AthensAthens, Greece, 4 Feb 2020 - 6 Feb 2020
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Conference Presentation (Invited)
NEST simulator: single point neuron and networks
Hackathon on Cerebellum Modelling, PaviaPavia, Italy, 13 Jan 2020 - 15 Jan 2020
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Journal Article
Identification of Common Neural Circuit Disruptions in Emotional Processing Across Psychiatric Disorders
The American journal of psychiatry 177(5), 411-421 (2020) [10.1176/appi.ajp.2019.18111271]
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Conference Presentation (Invited)
NEST Simulator: single point neuron and networks
Hackathon on Cerebellum Modelling, PaviaPavia, Italy, 13 Jan 2020 - 15 Jan 2020
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Journal Article
Neurobiological divergence of the positive and negative schizophrenia subtypes identified upon a new factor-structure of psychopathology using non-negative factorization: An international machine-learning study
Biological psychiatry 83(3), 282-293 (2020) [10.1016/j.biopsych.2019.08.031]
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Journal Article
Sex Classification by Resting State Brain Connectivity
Cerebral cortex 30(2), 824-835 (2020) [10.1093/cercor/bhz129]
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Lecture (Other)
Software Development in Science
Lecture at Jülich Supercomputing Centre (Jülich, Germany), 19 Nov 2019 - 20 Nov 2019
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Poster (Other)
Ultra high-resolution mapping of occipital white matter tracts disentangles current controversies
Annual Meeting of the Organization of Human Brain Mapping (OHBM), RomeRome, Italy, 9 Jun 2019 - 13 Jun 2019
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Poster (Other)
Deep Learning speeds up gapless cytoarchitectonic mapping in the human brain
Annual Meeting of the Organization of Human Brain Mapping (OHBM), RomeRome, Italy, 9 Jun 2019 - 13 Jun 2019
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Poster (Other)
Aligning Images of Large Human Brain Sections on a Cellular Level using Bisected Cells
2019 Annual Meeting of the Organization of Human Brain Mapping (OHBM), RomeRome, Italy, 9 Jun 2019 - 13 Jun 2019
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Conference Presentation (Other)
NESTML Tutorial
2nd HPAC Platform Training, HeidelbergHeidelberg, Germany, 26 Nov 2019 - 28 Nov 2019
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Journal Article
Passing the message: representation transfer in modular balanced networks
Frontiers in computational neuroscience 13, 79 (2019) [10.3389/fncom.2019.00079]
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Deterministic networks for probabilistic computing
Scientific reports 9(1), 18303 (2019) [10.1038/s41598-019-54137-7]
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Talk (non-conference) (Invited)
Multiscale Simulations in Neuroscience: Infrastructure and Problems
2019 Fall Multiscale Seminar Department of Applied Mathematics, Illinois Institute of TechnologyChicago, Illinois Institute of Technology, USA, 21 Oct 2019
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Journal Article
Spiking Neural Networks that Learn to Learn / Gepulste Neuronale Netze lernen zu lernen
Jülich : Bernstein Koordinationsstelle (BCOS) 2019, 8-9 (2019) special issue: "Bernstein Feature 2019"
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Poster (After Call)
Learning to Learn on High Performance Computing
Society for Neuroscience Meeting 2019, ChicagoChicago, USA, 19 Oct 2019 - 23 Oct 2019
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Conference Presentation (After Call)
Staged deployment of interactive multi-application HPC workflows
The 2019 International Conference on High Performance Computing & Simulation, DublinDublin, Ireland, 15 Jul 2019 - 19 Jul 2019
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NEST 2.18.0
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Conference Presentation (Other)
NESTML Tutorial
NEST Conference 2019: A Forum for Users and Developers, AasAas, Norway, 24 Jun 2019 - 25 Jun 2019
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Poster (After Call)
NESTML: An extensible modeling language for biologically plausible neural networks
NEST Conference 2019: A Forum for Users and Developers, AasAas, Norway, 24 Jun 2019 - 25 Jun 2019
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Preprint
Conditions for wave trains in spiking neural networks
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odMLtables: A User-Friendly Approach for Managing Metadata of Neurophysiological Experiments
Frontiers in neuroinformatics 13, 62 (2019) [10.3389/fninf.2019.00062]
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Poster (Other)
Impact of brain parcellation on parameter optimization of the whole-brain dynamical models
Organization for Human Brain Mapping 2019, OHBM 2019, RomeRome, Italy, 9 Jun 2019 - 13 Jun 2019
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Journal Article
Editorial: Linking experimental and computational connectomics
Network neuroscience 3(4), 902-904 (2019) [10.1162/netn_e_00108]
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Firing rate homeostasis counteracts changes in stability of recurrent neural networks caused by synapse loss in Alzheimer's disease
{1909.01012 [q-bio.NC] (2019)
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Conference Presentation (Other)
Transmittance and Diattenuation of Brain Tissue Explained by Finite-Difference Time-Domain Simulations
3rd HBP Student Conference, Ghent UniversityGhent University, Belgium, 6 Feb 2019 - 7 Feb 2019
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Conference Presentation (After Call)
Functional Renormalization Group for Stochastic Rate Neurons
DPG Spring Meeting, Section Condensed Matter, RegensburgRegensburg, Germany, 31 Mar 2019 - 5 Apr 2019
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Journal Article
Practical recommendations to conduct a neuroimaging meta‐analysis for neuropsychiatric disorders
Human brain mapping 40(17), 5142-5154 (2019) [10.1002/hbm.24746]
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Conference Presentation (Invited)
NESTML: A domain-specific language for biologically realistic neuron and synapse models
The Computational Modeling in Biology Network 2019, COMBINE 2019, HeidelbergHeidelberg, Germany, 15 Jul 2019 - 19 Jul 2019
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Talk (non-conference) (Invited)
(Mean-)Field Theory Methods in Neuroscience
Seminar, ENS, ParisENS, Paris, France, 20 Jun 2019
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Conference Presentation (Invited)
State-dependent sequence processing in Spiking Neural Networks
NII Shonan Meeting: "Language as goal-directed sequential behavior", KanagawaKanagawa, Japan, 19 May 2019 - 23 May 2019
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Lecture (Other)
The Balanced State in Random Networks
Lecture at EITN Spring School 2019 (Paris, France), 12 Apr 2019 - 12 Apr 2019
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Journal Article
A closed-loop toolchain for neural network simulations of learning autonomous agents
Frontiers in computational neuroscience 13, 46 (2019) [10.3389/fncom.2019.00046]
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Journal Article
Evaluation of Spike Sorting Algorithms: Application to Human Subthalamic Nucleus Recordings and Simulations
Neuroscience 414, 168-185 (2019) [10.1016/j.neuroscience.2019.07.005]
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Contribution to a conference proceedings/Contribution to a book
Towards 3D reconstruction of neuronal cell distributions from histological human brain sections
HPCC proceedings
Braincomp 2019, CetraroCetraro, Italy, 15 Jul 2019 - 19 Jul 2019
IOS press 1-17 (2019)
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Talk (non-conference) (Invited)
L2L in Data-Based Models of Visual Cortex
HBP L2L (learning to learn) workshop, FuerbergFuerberg, Austria, 2 Jun 2019 - 5 Jun 2019
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Journal Article
Leveraging heterogeneity for neural computation with fading memory in layer 2/3 cortical microcircuits
PLoS Computational Biology 15(4), e1006781 - (2019) [10.1371/journal.pcbi.1006781]
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Journal Article
Common and distinct neural correlates of dual-tasking and task-switching: a meta-analytic review and a neuro-cognitive processing model of human multitasking
Brain structure & function 224(5), 1845–1869 (2019) [10.1007/s00429-019-01870-4]
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Journal Article
Meta-analytic Evidence for Neural Dysactivity Underlying Sexual Dysfunction
The journal of sexual medicine 16(5), 614–617 (2019) [10.1016/j.jsxm.2019.02.012]
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Functional brain alterations in acute sleep deprivation: An activation likelihoodestimation meta-analysis
Sleep medicine reviews 46, 64-73 (2019) [10.1016/j.smrv.2019.03.008]
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Empirical examination of the replicability of associations between brain structure and psychological variables
eLife 8, e43464 (2019) [10.7554/eLife.43464]
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Rank Selection in Non-negative Matrix Factorization: systematic comparison and a new MAD metric
2019 International Joint Conference on Neural Networks, BudapestBudapest, Hungary, 14 Jul 2019 - 19 Jul 2019
7 pp. (2019)
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Journal Article
Love is analogous to money in human brain: Coordinate-based and functional connectivity meta-analyses of social and monetary reward anticipation
Neuroscience & biobehavioral reviews 100, 108 - 128 (2019) [10.1016/j.neubiorev.2019.02.017]
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arbor-sim/arbor: Arbor Library v0.2
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Brain alterations in children/adolescents with ADHD revisited: a neuroimaging meta-analysis of 96 structural and functional studies
Neuroscience & biobehavioral reviews 100, 1-8 (2019) [10.1016/j.neubiorev.2019.02.011]
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Journal Article
Multimodal Parcellations and Extensive Behavioral Profiling Tackling the Hippocampus Gradient
Cerebral cortex 29(11), 4595-4612 (2019) [10.1093/cercor/bhy336]
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Journal Article
Diattenuation Imaging reveals different brain tissue properties
Scientific reports 9(1), 1939 (2019) [10.1038/s41598-019-38506-w]
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Journal Article
Functional Connectivity Changes of Key Regions for Motor Initiation in Parkinson’s Disease
Cerebral cortex 29, 383-396 (2019) [10.1093/cercor/bhy259]
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A network view on brain regions involved in experts’ object and pattern recognition: Implications for the neural mechanisms of skilled visual perception
Brain and cognition 131, 74-86 (2019) [10.1016/j.bandc.2018.09.007]
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Journal Article
Neural networks of aggression: ALE meta-analyses on trait and elicited aggression
Brain structure & function 224(1), 133-148 (2019) [10.1007/s00429-018-1765-3]
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Journal Article
Quantitative Three-Dimensional Reconstructions of Excitatory Synaptic Boutons in Layer 5 of the Adult Human Temporal Lobe Neocortex: A Fine-Scale Electron Microscopic Analysis
Cerebral cortex 29(7), 2797–2814 (2019) [10.1093/cercor/bhy146]
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Journal Article
Exploring the role of striatal D1 and D2 medium spiny neurons in action selection using a virtual robotic framework
European journal of neuroscience 49(6), 737-753 (2019) [10.1111/ejn.14021]
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Journal Article
Cytoarchitectonic segregation of human posterior intraparietal and adjacent parieto-occipital sulcus and its relation to visuomotor and cognitive functions
Cerebral cortex 29(3), 1305–1327 (2019) [10.1093/cercor/bhy245]
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Journal Article
Methods for identification of spike patterns in massively parallel spike trains
Biological cybernetics 112(1-2), 57 - 80 (2018) [10.1007/s00422-018-0755-0]
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Preprint
Self-consistent formulations for stochastic nonlinear neuronal dynamics
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Preprint
Diattenuation Imaging reveals different brain tissue properties
(2019)
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Preprint
Finite-Difference Time-Domain simulations of transmission microscopy enable a better interpretation of 3D nerve fiber architectures in the brain
(2018)
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Journal Article
VIOLA—A Multi-Purpose and Web-Based Visualization Tool for Neuronal-Network Simulation Output
Frontiers in neuroinformatics 12, 75 (2018) [10.3389/fninf.2018.00075]
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Conference Presentation (Other)
Networking for young researchers in the HBP
Human Brain Project Summit 2018, MaastrichtMaastricht, Netherlands, 16 Oct 2018 - 18 Oct 2018
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Conference Presentation (Other)
Hyperparameter optimization for networks with structural plasticity using L2L
Human Brain Project Summit 2018, MaastrichtMaastricht, Netherlands, 16 Oct 2018 - 18 Oct 2018
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Journal Article
Assessing robustness against potential publication bias in Activation Likelihood Estimation (ALE) meta-analyses for fMRI
PLOS ONE 13(11), - (2018) [10.1371/journal.pone.0208177]
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Talk (non-conference) (Invited)
ANALYSIS OF SPATIO-TEMPORAL PATTERNS IN EXPERIMENTAL SPIKE TRAINS WITH SPADE
13th V4A meeting, FranceFrance,
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Lecture (Other)
Training course "Porting code from Matlab to Python"
Lecture at (Jülich, Germany), 8 Oct 2018 - 9 Oct 2018
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Lecture (Other)
Training course "Software Development in Science"
Lecture at Jülich Supercomputing Centre (Jülich, Germany), 19 Nov 2018 - 20 Nov 2018
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Conference Presentation (Invited)
Computational Ecosystem in Neuroscience: High Performance Analytics and Computing for the HBP
High Performance Computing (HPC) Resources for Parallel Simulations and Data Analysis: NSG and HPAC, satellite symposium at Society for Neuroscience Meeting 2018, San DiegoSan Diego, USA, 3 Nov 2018 - 3 Nov 2018
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Conference / Event
High Performance Computing (HPC) Resources for Parallel Simulations and Data Analysis: NSG and HPAC
Society for Neuroscience Meeting 2018, San DiegoSan Diego, USA, 3 Nov 2018 - 3 Nov 2018
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Poster (Other)
Co-Design Project 8 The Virtual Brain (TVB): Interfacing The Virtual Brain with HBP Platforms
Human Brain Project Summit, MaastrichtMaastricht, Netherlands, 16 Oct 2018 - 18 Oct 2018
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Poster (Other)
The Virtual Epileptic Patient Workflow
Human Brain Project Summit, MaastrichtMaastricht, Netherlands, 16 Oct 2018 - 18 Oct 2018
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Conference Presentation (Other)
"Learning-2-Learn" on HPC
Human Brain Project Summit, MaastrichtMaastricht, Netherlands, 16 Oct 2018 - 18 Oct 2018
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Poster (Other)
Arbor: A morphologically detailed neural network simulation library for modern high performance computer architectures
Human Brain Project Summit, MaastrichtMaastricht, Netherlands, 15 Oct 2018 - 18 Oct 2018
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Journal Article
Code Generation in Computational Neuroscience: A Review of Tools and Techniques
Frontiers in neuroinformatics 12, 68 (2018) [10.3389/fninf.2018.00068]
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Journal Article
Neural correlates of action: Comparing meta-analyses of imagery, observation, and execution
Neuroscience & biobehavioral reviews 94, 31 - 44 (2018) [10.1016/j.neubiorev.2018.08.003]
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Poster (After Call)
Utilizing the Elephant and NetworkUnit frameworks within the Collaboratory for an HPC-enabled workflow
Human Brain Project Summit 2018, MaastrichtMaastricht, Netherlands, 15 Oct 2018 - 18 Oct 2018
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Journal Article
Optimal Sequence Memory in Driven Random Networks
Physical review / X 8(4), 041029 (2018) [10.1103/PhysRevX.8.041029]
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Software
arbor-sim/arbor: Version 0.1: First release
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Talk (non-conference) (Invited)
Neural Networks and Reservoir Computing
Seminar, OetzOetz, Austria, 4 Jun 2018 - 8 Jun 2018
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Poster (Other)
Field Theory for Nonlinear Stochastic Rate Neurons
Bernstein Conference 2018, BerlinBerlin, Germany, 25 Sep 2018 - 28 Sep 2018
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Poster (Panel discussion)
Reproducible data analysis of activity data using open-source software toolsNeo & Elephant
Bernstein Conference 2018, BCCN 2018, BerlinBerlin, Germany, 25 Sep 2018 - 29 Sep 2018
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Poster (After Call)
Quantitative comparison of a mesocircuit model with resting state activity in the macaque motor cortex
Bernstein Conference 2018, BerlinBerlin, Germany, 26 Sep 2018 - 28 Sep 2018
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Abstract
A mesoscopic layered cortical network model for spiking activity and local field potentials
Bernstein Conference 2018, BerlinBerlin, Germany, 26 Sep 2018 - 28 Sep 2018
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Poster (After Call)
A mesoscopic layered cortical network model for spiking activity and local field potentials
Bernstein Conference 2018, BerlinBerlin, Germany, 26 Sep 2018 - 28 Sep 2018
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Abstract
A second type of criticality in the brain uncovers rich multiple-neuron dynamics
Bernstein Conference, BerlinBerlin, Germany, 25 Sep 2018 - 28 Sep 2018
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Poster (After Call)
A second type of criticality in the brain uncovers rich multiple-neuron dynamics
Bernstein Conference, RWTH AachenBerlin, RWTH Aachen, Germany, 25 Sep 2018 - 28 Sep 2018
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Contribution to a conference proceedings
There is no noise: Bayesian computation with networks of deterministic neurons
Bernstein Conference 2018, BerlinBerlin, Germany, 25 Sep 2018 - 28 Sep 2018
W 38 (2018) [10.12751/nncn.bc2018.0056]
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Poster (Other)
Structural correlates of visuospatial and verbal working memory
Synapsium, NijmegenNijmegen, The Netherlands, 9 Jun 2018 - 9 Jun 2018
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Poster (Other)
Structural correlates of visuospatial and verbal working memory
6th North Sea Laterality, DundeeDundee, Great Britain, 22 Aug 2018 - 24 Aug 2018
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