Institute of Biological Information Processing (IBI)

Structural Biochemistry (IBI-7)

Publications 2024

Journal Article Arinkin, V. ; Granzin, J.FZJ* ; Jaeger, K.-E.FZJ* ; Willbold, D.FZJ* ; Krauss, U.FZJ* ; Batra-Safferling, R. (Corresponding author)FZJ*
Conserved Signal Transduction Mechanisms and Dark Recovery Kinetic Tuning in the Pseudomonadaceae Short Light, Oxygen, Voltage (LOV) Protein Family
Journal of molecular biology 436(5), 168458 - (2024) [10.1016/j.jmb.2024.168458]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Bestsennaia, E. ; Maslov, I. ; Balandin, T.FZJ* ; Alekseev, A. ; Yudenko, A. ; Abu Shamseye, A.FZJ* ; Zabelskii, D. ; Baumann, A. ; Catapano, C. ; Karathanasis, C. ; Gordeliy, V.FZJ* ; Heilemann, M. ; Gensch, T. (Corresponding author)FZJ* ; Borshchevskiy, V.
Channelrhodopsin‐2 Oligomerization in Cell Membrane Revealed by Photo‐Activated Localization Microscopy
Angewandte Chemie 63(11), e202307555 (2024) [10.1002/anie.202307555]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Bestsennaia, E.FZJ* ; Maslov, I. ; Balandin, T.FZJ* ; Alekseev, A. ; Yudenko, A. ; Abu Shamseye, A.FZJ* ; Zabelskii, D. ; Baumann, A.FZJ* ; Catapano, C. ; Karathanasis, C. ; Gordeliy, V.FZJ* ; Heilemann, M. ; Gensch, T. (Corresponding author)FZJ* ; Borshchevskiy, V. (Corresponding author)
Channelrhodopsin‐2 Oligomerization in Cell Membrane Revealed by Photo‐Activated Localization Microscopy
Angewandte Chemie 136(11), e202307555 (2024) [10.1002/ange.202307555]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Bitzenhofer, N. L.FZJ* ; Höfel, C. ; Thies, S.FZJ* ; Weiler, A. J.FZJ* ; Eberlein, C. ; Heipieper, H. J. ; Batra-Safferling, R.FZJ* ; Sundermeyer, P.FZJ* ; Heidler, T.FZJ* ; Sachse, C.FZJ* ; Busche, T. ; Kalinowski, J. ; Belthle, T. ; Drepper, T.FZJ* ; Jaeger, K.-E.FZJ* ; Loeschcke, A. (Corresponding author)FZJ*
Exploring engineered vesiculation by Pseudomonas putida KT2440 for natural product biosynthesis
Microbial biotechnology 17(1), e14312 (2024) [10.1111/1751-7915.14312]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Blömeke, L.FZJ* ; Rehn, F.FZJ* ; Kraemer-Schulien, V.FZJ* ; Kutzsche, J.FZJ* ; Pils, M.FZJ* ; Bujnicki, T.FZJ* ; Lewczuk, P. ; Kornhuber, J. ; Freiesleben, S. D. ; Schneider, L.-S. ; Preis, L. ; Priller, J. ; Spruth, E. J. ; Altenstein, S. ; Lohse, A. ; Schneider, A. ; Fliessbach, K. ; Wiltfang, J. ; Hansen, N. ; Rostamzadeh, A. ; Düzel, E. ; Glanz, W. ; Incesoy, E. I. ; Butryn, M. ; Buerger, K. ; Janowitz, D. ; Ewers, M. ; Perneczky, R. ; Rauchmann, B.-S. ; Teipel, S. ; Kilimann, I. ; Goerss, D. ; Laske, C. ; Munk, M. H. ; Sanzenbacher, C. ; Spottke, A. ; Roy-Kluth, N. ; Heneka, M. T. ; Brosseron, F. ; Wagner, M. ; Wolfsgruber, S. ; Kleineidam, L. ; Stark, M. ; Schmid, M. ; Jessen, F. ; Bannach, O. (Corresponding author)FZJ* ; Willbold, D. (Corresponding author)FZJ* ; Peters, O. (Corresponding author)
Aβ oligomers peak in early stages of Alzheimer's disease preceding tau pathology
Alzheimer's & dementia / Diagnosis, assessment & disease monitoring 16(2), e12589 (2024) [10.1002/dad2.12589]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Dluhosch, D. ; Kersten, L. S. ; Schott-Verdugo, S.FZJ* ; Hoppen, C. ; Schwarten, M.FZJ* ; Willbold, D.FZJ* ; Gohlke, H.FZJ* ; Groth, G. (Corresponding author)
Structure and dimerization properties of the plant-specific copper chaperone CCH
Scientific reports 14(1), 19099 (2024) [10.1038/s41598-024-69532-y]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Engilberge, S. ; Caramello, N. ; Bukhdruker, S. ; Byrdin, M. ; Giraud, T. ; Jacquet, P. ; Scortani, D. ; Biv, R. ; Gonzalez, H. ; Broquet, A. ; van der Linden, P. ; Rose, S. L. ; Flot, D. ; Balandin, T.FZJ* ; Gordeliy, V.FZJ* ; Lahey-Rudolph, J. M. ; Roessle, M. ; de Sanctis, D. ; Leonard, G. A. ; Mueller-Dieckmann, C. ; Royant, A.
The TR- ic OS setup at the ESRF: time-resolved microsecond UV–Vis absorption spectroscopy on protein crystals
Acta crystallographica / Section D 80(1), 16 - 25 (2024) [10.1107/S2059798323010483]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Eria-Oliveira, A.-S. ; Folacci, M. ; Chassot, A. A. ; Fedou, S. ; Thézé, N. ; Zabelskii, D. ; Alekseev, A. ; Bamberg, E. ; Gordeliy, V.FZJ* ; Sandoz, G. (Corresponding author) ; Vivaudou, M. (Corresponding author)
Hijacking of internal calcium dynamics by intracellularly residing viral rhodopsins
Nature Communications 15(1), 65 (2024) [10.1038/s41467-023-44548-6]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Escobedo, F. ; Gospalswamy, M. ; Hägerbäumer, P. ; Stank, T. J. ; Victor, J. ; Groth, G. ; Gohlke, H.FZJ* ; Dargel, C. (Corresponding author) ; Hellweg, T. (Corresponding author) ; Etzkorn, M. (Corresponding author)FZJ*
Characterization of Size-tuneable Aescin-Lipid Nanoparticles as Platform for Stabilization of Membrane Proteins
Colloids and surfaces / B 242, 114071 (2024) [10.1016/j.colsurfb.2024.114071]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Fatafta, H.FZJ* ; Khaled, M.FZJ* ; Kav, B. ; Olubiyi, O. O. ; Strodel, B. (Corresponding author)FZJ*
A brief history of amyloid aggregation simulations
Wiley interdisciplinary reviews / Computational Molecular Science 14(1), e1703 (2024) [10.1002/wcms.1703]2024 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Frieg, B.FZJ* ; Han, M. ; Giller, K. ; Dienemann, C. ; Riedel, D. ; Becker, S. (Corresponding author) ; Andreas, L. B. (Corresponding author) ; Griesinger, C. (Corresponding author) ; Schröder, G. F. (Corresponding author)FZJ*
Cryo-EM structures of lipidic fibrils of amyloid-β (1-40)
Nature Communications 15(1), 1297 (2024) [10.1038/s41467-023-43822-x]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Gardon, L.FZJ* ; Becker, N.FZJ* ; Gremer, L. (Corresponding author)FZJ* ; Heise, H. (Corresponding author)FZJ*
Structural Impact of N‐terminal Pyroglutamylate in an Amyloid‐β(3‐42) Fibril Probed by Solid‐State NMR Spectroscopy
Chemistry - a European journal 30(10), e202303007 (2024) [10.1002/chem.202303007]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Heid, L. F. ; Agerschou, E. D. ; Orr, A. A. ; Kupreichyk, T.FZJ* ; Schneider, W. ; Wördehoff, M. M. ; Schwarten, M.FZJ* ; Willbold, D.FZJ* ; Tamamis, P. ; Stoldt, M.FZJ* ; Hoyer, W. (Corresponding author)FZJ*
Sequence-based identification of amyloidogenic β-hairpins reveals a prostatic acid phosphatase fragment promoting semen amyloid formation
Computational and structural biotechnology journal 23, 417 - 430 (2024) [10.1016/j.csbj.2023.12.023]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Kiirikki, A. M. ; Antila, H. S. ; Bort, L. S. ; Buslaev, P. ; Favela-Rosales, F. ; Ferreira, T. M. ; Fuchs, P. F. J. ; Garcia-Fandino, R. ; Gushchin, I. ; Kav, B. ; Kučerka, N. ; Kula, P. ; Kurki, M. ; Kuzmin, A. ; Lalitha, A. ; Lolicato, F. ; Madsen, J. J. ; Miettinen, M. S. ; Mingham, C. ; Monticelli, L. ; Nencini, R. ; Nesterenko, A. M. ; Piggot, T. J. ; Piñeiro, Á. ; Reuter, N. ; Samantray, S. ; Suárez-Lestón, F. ; Talandashti, R. ; Ollila, O. H. S. (Corresponding author)
Overlay databank unlocks data-driven analyses of biomolecules for all
Nature Communications 15(1), 1136 (2024) [10.1038/s41467-024-45189-z]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Kleywegt, G. J. ; Adams, P. D. ; Butcher, S. J. ; Lawson, C. L. ; Rohou, A. ; Rosenthal, P. B. ; Subramaniam, S. ; Topf, M. ; Abbott, S. ; Baldwin, P. R. ; Berrisford, J. M. ; Bricogne, G. ; Choudhary, P. ; Croll, T. I. ; Danev, R. ; Ganesan, S. J. ; Grant, T. ; Gutmanas, A. ; Henderson, R. ; Heymann, J. B. ; Huiskonen, J. T. ; Istrate, A. ; Kato, T. ; Lander, G. C. ; Lok, S.-M. ; Ludtke, S. J. ; Murshudov, G. N. ; Pye, R. ; Pintilie, G. D. ; Richardson, J. S. ; Sachse, C.FZJ* ; Salih, O. ; Scheres, S. H. W. ; Schroeder, G. F.FZJ* ; Sorzano, C. O. S. ; Stagg, S. M. ; Wang, Z. ; Warshamanage, R. ; Westbrook, J. D. ; Winn, M. D. ; Young, J. Y. ; Burley, S. K. ; Hoch, J. C. ; Kurisu, G. ; Morris, K. ; Patwardhan, A. ; Velankar, S.
Community recommendations on cryoEM data archiving and validation
IUCrJ 11(2), 2052-2525 (2024) [10.1107/S2052252524001246]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Kutzsche, J.FZJ* ; Guzman, G. A.FZJ* ; Willuweit, A.FZJ* ; Kletke, O. ; Wollert, E.FZJ* ; Gering, I.FZJ* ; Jürgens, D.FZJ* ; Breitkreutz, J. ; Stark, H. ; Beck-Sickinger, A. G. ; Klöcker, N. ; Hidalgo, P.FZJ* ; Willbold, D. (Corresponding author)FZJ*
An orally available Ca v 2.2 calcium channel inhibitor for the treatment of neuropathic pain
British journal of pharmacology 181(12), 1734-1756 (2024) [10.1111/bph.16309]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Lamm, G. H. U. ; Zabelskii, D. ; Balandin, T.FZJ* ; Gordeliy, V.FZJ* ; Wachtveitl, J. (Corresponding author)
Calcium-Sensitive Microbial Rhodopsin VirChR1: A Femtosecond to Second Photocycle Study
The journal of physical chemistry letters 15(20), 5510 - 5516 (2024) [10.1021/acs.jpclett.4c00693]2024 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Mamlins, E. (Corresponding author) ; Scharbert, L.FZJ* ; Cardinale, J. ; Krotov, M. ; Winter, E. ; Rathke, H. ; Strodel, B.FZJ* ; Ankrah, A. O. ; Sathekge, M. ; Haberkorn, U. ; Kratochwil, C. ; Giesel, F. L.
The Theranostic Optimization of PSMA-GCK01 Does Not Compromise the Imaging Characteristics of [99mTc]Tc-PSMA-GCK01 Compared to Dedicated Diagnostic [99mTc]Tc-EDDA/HYNIC-iPSMA in Prostate Cancer
Molecular imaging & biology 26(1), 81 - 89 (2024) [10.1007/s11307-023-01881-y]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Marin, E. ; Kovalev, K. ; Poelman, T. ; Veenstra, R. ; Borshchevskiy, V.FZJ* ; Guskov, A. (Corresponding author)
Custom Design of a Humidifier Chamber for In Meso Crystallization
Crystal growth & design 24(1), 325 - 330 (2024) [10.1021/acs.cgd.3c01034]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Nimerovsky, E. (First author) ; Sieme, D. ; Rezaie Ghaleh, N. (Corresponding author)FZJ*
Mobility of sodium ions in agarose gels probed through combined single- and triple-quantum NMR
Methods 228, 55-64 (2024) [10.1016/j.ymeth.2024.05.015] special issue: "NMR Spectroscopy"2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Paschold, A. ; Schäffler, M.FZJ* ; Miao, X. ; Gardon, L.FZJ* ; Krüger, S. ; Heise, H.FZJ* ; Röhr, M. I. S. ; Ott, M. ; Strodel, B. (Corresponding author)FZJ* ; Binder, W. H.
Photocontrolled Reversible Amyloid Fibril Formation of Parathyroid Hormone-Derived Peptides
Bioconjugate chemistry 35(7), 981–995 (2024) [10.1021/acs.bioconjchem.4c00188]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Peinado, R. d. S. ; Martins, L. G. ; Pacca, C. C. ; Saivish, M. V. ; Borsatto, K. C. ; Nogueira, M. L. ; Tasic, L. ; Arni, R. K. ; Eberle, R. J. (Corresponding author)FZJ* ; Coronado, M. A. (Corresponding author)
HR-MAS NMR Metabolomics Profile of Vero Cells under the Influence of Virus Infection and nsP2 Inhibitor: A Chikungunya Case Study
International journal of molecular sciences 25(3), 1414 - (2024) [10.3390/ijms25031414]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Pesch, V. ; Flores-Fernandez, J. M. ; Reithofer, S.FZJ* ; Ma, L.FZJ* ; Özdüzenciler, P.FZJ* ; Busch, Y. ; Sriraman, A. ; Wang, Y. ; Amidian, S. ; Kroepel, C. V. M.FZJ* ; Müller, L. ; Lien, Y. ; Rudtke, O. ; Frieg, B. ; Schröder, G. F.FZJ* ; Wille, H. (Corresponding author) ; Tamgüney, G. (Corresponding author)FZJ*
Vaccination with structurally adapted fungal protein fibrils induces immunity to Parkinson’s disease
Brain 147(5), 1644-1652 (2024) [10.1093/brain/awae061]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Podoliak, E. ; Lamm, G. H. U. ; Marin, E. ; Schellbach, A. V. ; Fedotov, D. A. ; Stetsenko, A. ; Asido, M. ; Maliar, N. ; Bourenkov, G. ; Balandin, T.FZJ* ; Baeken, C.FZJ* ; Astashkin, R. ; Schneider, T. R. ; Bateman, A. ; Wachtveitl, J. ; Schapiro, I. ; Busskamp, V. ; Guskov, A. ; Gordeliy, V.FZJ* ; Alekseev, A. (Corresponding author) ; Kovalev, K. (Corresponding author)
A subgroup of light-driven sodium pumps with an additional Schiff base counterion
Nature Communications 15(1), 3119 (2024) [10.1038/s41467-024-47469-0]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Reineke, B.FZJ* ; Paulus, I. ; Löffelsend, S. ; Yu, C.-H.FZJ* ; Vinogradov, D.FZJ* ; Meyer, A.FZJ* ; Hazur, J. ; Röder, J. ; Vollmer, M. ; Tamgüney, G.FZJ* ; Hauschild, S.FZJ* ; Boccaccini, A. R. ; Groll, J. ; Förster, S. (Corresponding author)FZJ*
On-chip fabrication and in-flow 3D-printing of microgel constructs: from chip to scaffold materials in one integral process
Biofabrication 16(2), 025038 (2024) [10.1088/1758-5090/ad3318]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Saivish, M. V. ; Menezes, G. d. L. ; da Silva, R. A. ; de Assis, L. R. ; Teixeira, I. d. S. ; Fulco, U. L. ; Avilla, C. M. S. ; Eberle, R. J.FZJ* ; Santos, I. d. A. ; Korostov, K.FZJ* ; Webber, M. L. ; da Silva, G. C. D. ; Nogueira, M. L. ; Jardim, A. C. G. ; Regasin, L. O. ; Coronado, M. A. (Corresponding author)FZJ* ; Pacca, C. C. (Corresponding author)
Acridones as promising drug candidates against Oropouche virus
Current research in microbial sciences 6, 100217 - (2024) [10.1016/j.crmicr.2023.100217]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Sanyasi, C. ; Balakrishnan, S. S. ; Chinnasamy, T. ; Venugopalan, N. ; Kandavelu, P. ; Batra-Safferling, R.FZJ* ; Muthuvel, S. K. (Corresponding author)
Insights on the dynamic behavior of protein disulfide isomerase in the solution environment through the SAXS technique
In Silico Pharmacology 12(1), 23 (2024) [10.1007/s40203-024-00198-0]2024 BibTeX | EndNote: XML, Text | RIS

Journal Article Schmitz, B. ; Frieg, B.FZJ* ; Homeyer, N. ; Jessen, G. ; Gohlke, H. (Corresponding author)FZJ*
Extracting binding energies and binding modes from biomolecular simulations of fragment binding to endothiapepsin
Archiv der Pharmazie 357(5), e2300612 (2024) [10.1002/ardp.202300612]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Schmuck, J. F.FZJ* ; Borggräfe, J. (Corresponding author) ; Etzkorn, M. (Corresponding author)FZJ*
The dynamic world of the 8–17 DNAzyme
Nature Communications 15(1), 5145 (2024) [10.1038/s41467-024-49500-w]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Sicoli, G. (First author) ; Sieme, D. (First author) ; Overkamp, K. ; Khalil, M. ; Backer, R. ; Griesinger, C. ; Willbold, D.FZJ* ; Rezaei-Ghaleh, N. (Corresponding author)FZJ*
Large dynamics of a phase separating arginine-glycine-rich domain revealed via nuclear and electron spins
Nature Communications 15(1), 1610 (2024) [10.1038/s41467-024-45788-w]2024 OpenAccess Files Fulltext BibTeX | EndNote: XML, Text | RIS

Journal Article Sieme, D. ; Rezaei-Ghaleh, N. (Corresponding author)FZJ*
Water dynamics in eutectic solutions of sodium chloride and magnesium sulfate: implications for life in Europa's subsurface ocean and ice shell
Physical chemistry, chemical physics 26(1), 105 - 115 (2024) [10.1039/D3CP03455K]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Sieme, D. (First author) ; Engelke, M. ; Rezaei-Ghaleh, N.FZJ* ; Becker, S. ; Wienands, J. ; Griesinger, C. (Corresponding author)
Autoinhibition in the Signal Transducer CIN85 Modulates B Cell Activation
Journal of the American Chemical Society 146(1), 399 - 409 (2024) [10.1021/jacs.3c09586]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Stief, T.FZJ* ; Vormann, K.FZJ* ; Lakomek, N.-A. (Corresponding author)FZJ*
Sensitivity-enhanced NMR 15N R1 and R1ρ relaxation experiments for the investigation of intrinsically disordered proteins at high magnetic fields
Methods 223, 1 - 15 (2024) [10.1016/j.ymeth.2024.01.008]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Last Modified: 05.02.2024