Institute of Biological Information Processing (IBI)

Structural Biochemistry (IBI-7)

Publications 2009

Allen, B. ; Kotchey, G. ; Chen, Y. ; Yanamala, N. ; Klein-Seetharaman, J. ; Kagan, V. ; Star, A.
Mechanistic Investigations of Horseradish Peroxidase-Catalyzed Degradation of Single-Walled Carbon Nanotubes
Journal of the American Chemical Society 131, 17194 - 17205 (2009) [10.1021/ja9083623]2009 BibTeX | EndNote: XML, Text | RIS

Artmann, G. M. ; Digel, I. ; Zerlin, K. F. ; Maggakis-Kelemen, C. ; Linder, P. ; Porst, D. ; Stadler, A. M. ; Kayser, P. ; Dikta, G. ; Temiz Artmann, A.
Hemoglobin senses body temperature
European biophysics journal 38, 589 - 600 (2009) [10.1007/s00249-009-0410-8]2009 BibTeX | EndNote: XML, Text | RIS

Balem, F. ; Yanamala, N. ; Klein-Seetharaman, J.
Additive Effects of Chlorin E6 and Metal Ion Binding on the Thermal Stability of Rhodopsin in Vitro
Photochemistry and photobiology 85, 471 - 478 (2009) [10.1111/j.1751-1097.2009.00539.x]2009 BibTeX | EndNote: XML, Text | RIS

Belikova, N. A. ; Tyurina, Y. Y. ; Borisenko, G. ; Tyurin, V. ; Samhan Arias, A. K. ; Yanamala, N. ; Furtmüller, P. G. ; Klein-Seetharaman, J. ; Obinger, C. ; Kagan, V. E.
Heterolytic reduction of fatty acid hydroperoxides by cytochrome c/cardiolipin complexes: antioxidant function in mitochondria
Journal of the American Chemical Society 131, 11288 - 11289 (2009) [10.1021/ja904343c]2009 BibTeX | EndNote: XML, Text | RIS

Fabiani, E. ; Stadler, A. M. ; Madern, D. ; Hirai, M. ; Zaccai, G.
Dynamics of apo-myoglobin in the alpha-to-beta transition and of partially unfolded aggregated protein
European biophysics journal 38, 237 - 244 (2009) [10.1007/s00249-008-0375-z]2009 BibTeX | EndNote: XML, Text | RIS

Feuerstein, S. E. ; Pulvermüller, A. ; Hartmann, R. ; Granzin, J. ; Stoldt, M. ; Henklein, P. ; Ernst, O. P. ; Heck, M. ; Willbold, D. ; Koenig, B. W.
Helix Formation in Arrestin Accompanies Recognition of Photoactivated Rhodopsin
Biochemistry 48, 10733 -10742 (2009) [10.1021/bi900544p]2009 BibTeX | EndNote: XML, Text | RIS

Fitter, J.
The perspective of studying multi-domain protein folding
Cellular and molecular life sciences 66, 1672 - 1681 (2009) [10.1007/s00018-009-8771-9]2009 BibTeX | EndNote: XML, Text | RIS

Funke, S. A. ; Birkmann, E. ; Willbold, D.
Detection of Amyloid-ß aggregates in body fluids: A suitable method for early diagnosis of Alzheimer's disease?
Current Alzheimer research 6, 285 - 289 (2009)2009 BibTeX | EndNote: XML, Text | RIS

Funke, S. A. ; Willbold, D.
Mirror image phage display - a method to generate D-peptide ligands for use in diagnostic or therapeutical applications?
Molecular BioSystems 5, 783 - 786 (2009) [10.1039/b904138a]2009 BibTeX | EndNote: XML, Text | RIS

Glück, J. M. ; Wittlich, M. ; Feuerstein, S. E. ; Hoffmann, S. ; Willbold, D. ; Koenig, B. W.
Integral membrane proteins in nanodiscs can be studied by solution NMR spectroscopy
Journal of the American Chemical Society 131, 12060 - 12061 (2009) [10.1021/ja904897p]2009 BibTeX | EndNote: XML, Text | RIS

Görtz, P. ; Opatz, J. ; Siebler, M. ; Funke, S. A. ; Willbold, D. ; Lange-Asschenfeldt, C.
Transient reduction of spontaneous neuronal network activity by sublethal amyloid ß (1-42) peptide concentrations
Journal of neural transmission / Parkinson's disease and dementia section 116, 351 - 355 (2009) [10.1007/s00702-009-0188-y]2009 BibTeX | EndNote: XML, Text | RIS

Guterl, K. ; Andexer, J. N. ; Sehl, T. ; von Langermann, J. ; Frindi-Wosch, I. ; Rosenkranz, T. ; Fitter, J. ; Gruber, K. ; Kragl, U. ; Eggert, T. ; Pohl, M.
Uneven Twins: Comparison of two enantiocomplementary hydroxynitrile lyases with a/ß--hydrolase fold
Journal of biotechnology 141, (2009) [10.1016/j.jbiotec.2009.03.010]2009 BibTeX | EndNote: XML, Text | RIS

Kagan, V. E. ; Wipf, P. ; Stoyanovsky, D. ; Greenberger, J. S. ; Borisenko, G. ; Belikova, N. A. ; Yanamala, N. ; Samhan Arias, A. K. ; Tungekar, M. A. ; Jiang, J. ; Tyurina, Y. Y. ; Ji, J. ; Klein-Seetharaman, J. ; Pitt, B. R. ; Shvedova, A. A. ; Bayir, H.
Mitochondrial targeting of electron scavenging antioxidants: Regulation of selective oxidation vs random chain reactions
Advanced drug delivery reviews 61, 1375 - 1385 (2009) [10.1016/j.addr.2009.06.008]2009 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Katranidis, A. ; Atta, D. ; Schlesinger, R. ; Nierhaus, K. H. ; Choli-Papadopoulous, T. ; Gregor, I. ; Gerrits, M. ; Büldt, G. ; Fitter, J.
Fast biosynthesis of GFP molecules - a single molecule fluorescence study
Angewandte Chemie / International edition 48, 1758 - 1761 (2009) [10.1002/anie.200806070]2009 BibTeX | EndNote: XML, Text | RIS

Kriegsmann, J. ; Gregor, I. ; von der Hocht, I. ; Klare, J. ; Engelhard, M. ; Enderlein, J. ; Fitter, J.
Translational Diffusion and Interaction of a Photoreceptor and Its Cognate Transducer Observed in Giant Unilamellar Vesicles by Using Dual-Focus FCS
ChemBioChem 10, 1823 - 1829 (2009) [10.1002/cbic.200900251]2009 BibTeX | EndNote: XML, Text | RIS

Kriegsmann, J. ; Brehs, M. ; Klare, J. P. ; Engelhard, M. ; Fitter, J.
Sensory rhodopsin II/transducer complex formation in detergent and in lipid bilayers studied with FRET
Biochimica et biophysica acta / Biomembranes 1788, 522 - 531 (2009) [10.1016/j.bbamem.2008.11.011]2009 BibTeX | EndNote: XML, Text | RIS

Leliveld, S. R. ; Hendriks, P. ; Michel, M. ; Sajnani, G. ; Bader, V. ; Trossbach, S. ; Prikulis, I. ; Hartmann, R. ; Jonas, E. ; Willbold, D. ; Requena, J. R. ; Korth, C.
Oligomer assembly of the C-terminal DISC1 domain (640-854) is controlled by self-association motifs and disease-associated polymorphism S704C
Biochemistry 48, 7746 - 7755 (2009) [10.1021/bi900901e]2009 BibTeX | EndNote: XML, Text | RIS

Majerus, T. ; Kottke, T.
Time-Resolved Fourier Transform Infrared Study on Photoadduct Formation and Secondary Structural Changes within the Phototropin LOV Domain
Biophysical journal 96, 1462 - 1470 (2009) [10.1016/j.bpj.2008.11.016]2009 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Mangels, C. ; Frank, A. O. ; Ziegler, J. ; Klingenstein, R. ; Schweimer, K. ; Willbold, D. ; Korth, C. ; Rösch, P. ; Schwarzinger, S.
Binding of TCA to the prion protein: mechanism, implication for therapy, and application as probe for complex formation of bio-macromolecules
Journal of biomolecular structure & dynamics 27, 163 - 170 (2009)2009 BibTeX | EndNote: XML, Text | RIS

Mohrlüder, J. ; Schwarten, M. ; Willbold, D.
Structure and potential functions of GABARAP
The FEBS journal 276, 4989 - 5005 (2009) [10.1111/j.1742-4658.2009.07207.x]2009 BibTeX | EndNote: XML, Text | RIS

Moiseeva, E. S. ; Reshnetnyak, A. B. ; Borshchevskiy, V. I. ; Baeken, C. ; Büldt, G. ; Gordeliy, V. I.
Comparative analysis of the quality of membrane protein bacteriorhodopsin crystals during crystallization in octylglucoside and octylthioglucoside
Journal of Surface Investigation. X-ray, Synchrotron and Neutron Techniques 3(1), 29 - 32 (2009) [10.1134/S1027451009010054]2009 BibTeX | EndNote: XML, Text | RIS

Müller-Schiffmann, A. ; Petsch, B. ; Leliveld, S. R. ; Muyrers, J. ; Salwierz, A. ; Mangels, C. ; Schwarzinger, S. ; Riesner, D. ; Stitz, L. ; Korth, C.
Complementarity determining regions of an anti-prion protein scFv fragment orchestrate conformation specificity and antiprion activity
Molecular immunology 46, 532 - 540 (2009) [10.1016/j.molimm.2008.07.023]2009 BibTeX | EndNote: XML, Text | RIS

Qi, Y. ; Dhiman, H. K. ; Bhola, N. E. ; Budyak, I. ; Kar, S. ; Man, D. ; Dutta, A. ; Tirupula, K. ; Carr, B. ; Grandis, J. R. ; Bar-Joseph, Z. ; Klein-Seetharaman, J.
Systematic prediction of human membrane receptor interactions
Proteomics 9, 5243 - 5255 (2009) [10.1002/pmic.200900259]2009 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Rosenkranz, T. ; Katranidis, A. ; Atta, D. ; Enderlein, J. ; Gregor, I. ; Grzelakowski, M. ; Rigler, P. ; Meier, W. ; Fitter, J.
Observing Proteins as Single Molecules Encapsulated in Surface-Tethered Polymeric Nanocontainers
ChemBioChem 10, 702 - 709 (2009) [10.1002/cbic.200800739]2009 BibTeX | EndNote: XML, Text | RIS

Schlenzig, D. ; Manhart, S. ; Cinar, Y. ; Willbold, D. ; Funke, S. A. ; Kleinschmidt, M. ; Hause, G. ; Schilling, S. ; Demuth, H.-U.
Pyroglutamate formation influences solubility and amyloidogenicity of amyloid peptides. A driving force in different neurodegenerative disorders?
Biochemistry 48, 7072 - 7078 (2009) [10.1021/bi900818a]2009 BibTeX | EndNote: XML, Text | RIS

Schünke, S. ; Stoldt, M. ; Novak, K. ; Kaupp, U. B. ; Willbold, D.
Solution structure of the Mesorhizobium loti K1 channel cyclic nucleotide-binding domain in complex with cAMP
EMBO reports 10, 729 - 735 (2009) [10.1038/embor.2009.68]2009 pmc Files Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Schwarten, M. ; Stoldt, M. ; Mohrlüder, J. ; Willbold, D.
Sequence-specific 1H, 13C and 15N resonance assignment of the autophagy-related protein Atg 8.
Biomolecular NMR assignments 3, 137 - 139 (2009) [10.1007/s12104-009-9159-3]2009 BibTeX | EndNote: XML, Text | RIS

Schwarten, M. ; Mohrlüder, J. ; Ma, P. ; Stoldt, M. ; Thielmann, Y. ; Stangler, T. ; Hersch, N. ; Hoffmann, B. ; Merkel, R. ; Willbold, D. (Corresponding author)
Nix directly binds to GABARAP: A possible crosstalk between apoptosis and autophagy
Autophagy 5(5), 690 - 698 (2009) [10.4161/auto.5.5.8494]2009 Files BibTeX | EndNote: XML, Text | RIS

Stadler, A. M. ; Digel, I. ; Embs, J. P. ; Unruh, T. ; Zaccai, G. ; Büldt, G. ; Artmann, G.
From Powder to Solution: Hemoglobin Dynamics Correlated to Body Temperature
Biophysical journal 96, 5073 - 5081 (2009) [10.1016/j.bpj.2009.03.043]2009 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Tanizawa, H. ; Taniguchi, M. ; Ghimire, G. D. ; Mitaku, S.
Prediction of fragile points of coiled coils
Chem-bio informatics journal 9, 12 - 29 (2009) [10.1273/cbij.9.12]2009 BibTeX | EndNote: XML, Text | RIS

Thielmann, Y. ; Weiergräber, O. H. ; Mohrlüder, J. ; Willbold, D.
Structural framework of the GABARAP-calreticulin interface - implications for substrate binding to endoplasmic reticulum chaperones
The FEBS journal 276, 1140 - 1152 (2009) [10.1111/j.1742-4658.2008.06857.x]2009 BibTeX | EndNote: XML, Text | RIS

Thielmann, Y. ; Weiergräber, O. H. ; Mohrlüder, J. ; Willbold, D.
Structural characterization of GABARAP-ligand interactions
Molecular BioSystems 5, 575 - 579 (2009) [10.1039/b900425d]2009 BibTeX | EndNote: XML, Text | RIS

Thielmann, Y. ; Weiergräber, O. H. ; Ma, P. ; Schwarten, M. ; Mohrlüder, J. ; Willbold, D.
Comparative modeling of human NSF reveals a possible binding mode of GABARAP and GATE-16
Proteins 77, 637 - 646 (2009) [10.1002/prot.22477]2009 BibTeX | EndNote: XML, Text | RIS

Tirupula, K. C. ; Balem, F. ; Yanamala, N. ; Klein-Seetharaman, J.
pH-dependent Interaction of Rhodopsin with Cyanidin-3-glucoside. 2. Functional Aspects
Photochemistry and photobiology 85(2), 463 - 470 (2009) [10.1111/j.1751-1097.2008.00533.x]2009 BibTeX | EndNote: XML, Text | RIS

van Groen, T. ; Kadish, I. ; Wiesehan, K. ; Funke, S. A. ; Willbold, D.
In vitro and in vivo staining characteristics of small, fluorescent, Aß42 binding D-enantiomeric peptides in transgenic AD mouse models
ChemMedChem 4, 276 - 282 (2009) [10.1002/cmdc.200800289]2009 BibTeX | EndNote: XML, Text | RIS

Wittlich, M. ; Koenig, B. W. ; Stoldt, M. ; Schmidt, H. ; Willbold, D.
NMR structural characterization of HIV-1 virus protein U cytoplasmic domain in the presence of dodecylphosphatidylcholine micelles
The FEBS journal 276, 6560 - 6575 (2009) [10.1111/j.1742-4658.2009.07363.x]2009 BibTeX | EndNote: XML, Text | RIS

Yanamala, N. ; Tirupula, K. C. ; Balem, F. ; Klein-Seetharaman, J.
pH-dependent Interaction of Rhodopsin with Cyanidin-3-glucoside. 1. Structural Aspects
Photochemistry and photobiology 85(2), 454 - 462 (2009) [10.1111/j.1751-1097.2008.00517.x]2009 BibTeX | EndNote: XML, Text | RIS

Last Modified: 25.05.2022