Preprints
Jelena, J. & Gilliard, G., Ibrahim, H. M. M., Argüelles-Arias, A., Rondelli, V., Crowet, J., Genva, M., Luzuriaga-Loaiza, W., Deboever, E., Nasir, M., Lins, L., Mathelie-Guinlet, M., Eschrig, S., Ranf, S., Dorey, S., De Coninck, B., Nürnberger, T., Mongrand, S., Höfte, M., Zipfel, c., Dufrêne, Y., Deleu, M., Ongena. Mechanosensing and sphingolipid-docking mediate lipopeptide-induced immunity in Arabidopsis. bioRxiv: 547613. doi: 10.1101/2023.07.04.547613
Qian, J., Ibrahim, H. M. M., Erz, M., Kümmel, F., Panstruga, R., Kusch, S. 2023. Long noncoding RNAs emerge from transposon-derived antisense sequences and may contribute to infection stage-specific transposon regulation in a fungal phytopathogen. bioRxiv: 544723. doi: 10.1101/2023.06.13.544723
Peer-reviewed
Kusch, S., Larrouy, J.*, Ibrahim, H. M. M.*, Mounichetty, S., Gasset, N., Barascud, M., Mbengue, M., Zanchetta, C., Lopez-Roques, C., Donnadieu, C., Godiard, L., Raffaele, S. (2022). Transcriptional response to host chemical cues underpins the expansion of host range in a fungal plant pathogen lineage. ISME Journal 16: 138-148. https://doi.org/10.1038/s41396-021-01058-x
Ceulemans, E., Ibrahim, H. M. M., De Coninck, B., Goossens, A. (2021). Pathogen effectors: exploiting the promiscuity of plant signaling hubs. Trends in Plant Science 26(8): 780-795. https://doi.org/10.1016/j.tplants.2021.01.005
Rodrigues, S., Karim, M., Impens L., Van Lerberge, E., Coussens, G., Aesaert, S., Rombaut, D., Holtappels, D., Ibrahim, H. M. M., Van Montagu, M., Wagemans, J., De Coninck, B., Pauwels, L. (2021). Efficient CRISPR-mediated base editing in Agrobacterium spp. Proceedings of the National Academy of Sciences, 118(2): e2013338118. https://doi.org/10.1073/pnas.2013338118
Ibrahim, H. M. M., Kusch, S., Didelon, M.,Raffaele, S. (2021). Genome-wide alternative splicing profiling in the fungal plant pathogen Sclerotinia sclerotiorum during the colonization of diverse host families. Molecular Plant Pathology 22(1): 31-47. http://doi.org/10.1111/mpp.13006
Hoff, G., Arguelles‐Arias, A., Boubsi, F., Prsic, J., Meyer, T., Ibrahim, H. M. M., Steels, S., Luzuriaga, P., Legras, A., Franzil, L., Osorio, V., Lara, Y., De Coninck, B., Jacques, P., Deleu, M., Petit, M., Van Wuytswinkel, O., Ongena M. (2021). Surfactin stimulated by root molecular patterns acts as a key driver of Bacillus-plant mutualistic interaction. mBio 12(6): e01774-21. https://doi.org/10.1128/mBio.01774-21.
Kusch, S., Ibrahim, H. M. M.,Zanchetta, C., Lopez-Roques, C., Donnadieu, C., Raffaele, S. (2020). A chromosome-scale genome assembly resource for Myriosclerotinia sulcatula infecting sedge grass (Carex sp.). MPMI 33(7): 880-883. https://doi.org/10.1094/MPMI-03-20-0060-A
Kusch, S., Németh, M. Z., Vaghefi, N., Ibrahim, H. M. M., Panstruga, R., Kiss, L.(2020). A short-read genome assembly resource for Leveillula taurica causing powdery mildew disease of sweet pepper (Capsicum annuum). MPMI 33(6): 782-786. https://doi.org/10.1094/MPMI-02-20-0029-A
Ahmed, A. H. H., Desouky, A. F., Reda, A. A., Ibrahim, H. M. M., Stützel, H., Hanafy, M. S. (2020). Impact of chitosan on shoot regeneration from faba bean embryo axes through its effect on phenolic compounds and endogenous hormones. Plant Archives 20(1): 2269-2279.
Ibrahim, H. M. M., Ahmad E., Martínez-Medina, A., Aly, M. A. M. (2019). Effective approaches to study the plant-root knot nematode interaction. Plant Physiology and Biochemistry 141: 332–342. https://doi.org/10.1016/j.plaphy.2019.06.009
Ahmad, E. A., Ibrahim, H. M. M., Elshabrawi, H. M., Hussein, A. H., Aly, M. A. M. (2019). Resistance of tomato against the root knot nematode, Meloidogyne incognita, is enhanced by soil drench application with salicylic acid. Plant Archives 19(2): 2288-2295.
Abdel-Aziz, S. H., El Awady, M. E., Nasr-Eldin, M. A., Ibrahim, H. M. M., Al Bahnasy, M. E. (2019). Production and assessment of antioxidant activity of exopolysaccharide from marine Streptomyces globisporus BU2018. Egyptian Journal of Botany 57(3): 1–11. https://doi.org/10.21608/ejbo.2019.6847.1274
El Awady, M. E., Nasr Eldin, M. A., Ibrahim, H. M. M., Al Bahnasy, M. E., Abdel Aziz, S. H. (2019). In vitro evaluation of antioxidant, anticancer, and antiviral activities of exopolysaccharide from Streptomyces hirsutus NRC2018. Journal of Applied Pharmaceutical Science 9(11): 10–18. https://doi.org/10.7324/JAPS.2019.91102
Zhang, X. N., Shi, Y., Powers, J. J., Gowda, N. B., Zhang, C., Ibrahim, H. M. M., Ball, H. B., Chen, S. L., Lu, H., Mount, S. M. (2017). Transcriptome analyses reveal SR45 to be a neutral splicing regulator and a suppressor of innate immunity in Arabidopsis thaliana. BMC Genomics 18(1): 772. https://doi.org/10.1186/s12864-017-4183-7
Ibrahim, H. M. M., Alkharouf, N. W., Meyer, S. L. F., Aly, M. A. M., Gamal El-Din, A. E. K. Y., Hussein, E. H. A., Matthews, B. F. (2011). Post-transcriptional gene silencing of root-knot nematode in transformed soybean roots. Experimental Parasitology 127: 90-99. https://doi.org/10.1016/j.exppara.2010.06.037
Ibrahim, H. M. M., Hosseini, P., Alkharouf, N. W., Hussein, E. H. A., Gamal El-Din, A. E. K. Y., Aly, M. A. M., Matthews, B. F. (2011). Analysis of gene expression in soybean (Glycine max) roots in response to the root knot nematode Meloidogyne incognita using microarrays and KEGG pathways. BMC Genomics 12: 220-236. https://doi.org/10.1186/1471-2164-12-220
Book chapters
Matthews, B. F., Ibrahim, H. M. M., Hosseini, P., Alkharouf, N., Natarajan, S. (2013). Response of soybean roots to soybean cyst nematode at the molecular level - Hidden half, 1–16. In: Plant Roots: The hidden half. 4th edition, Tom Beeckman (Ed.), ISBN: 978-1-4398-4648-3. Available at https://www.taylorfrancis.com/books/9780429108594/chapters/10.1201/b14550-51
Matthews, B. F., Ibrahim, H. M. M., Klink, V. P. (2012). Changes in the expression of genes in soybean roots infected by nematodes. In: Soybean - Genetics and Novel Techniques for Yield Enhancement, Dora Krezhova (Ed.) 1, ISBN: 978-953-307-721-5. InTech, available at
https://doi.org/10.5772/20883
