IAS-8 Publikationen 2024

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Contribution to a conference proceedings/Contribution to a book  ;  ;  ;  ;  ;  ;
Adapting Agricultural Virtual Environments in Game Engines to Improve HPC Accessibility
Communications in Computer and Information Science
nordic e-Infrastructure Collaboration Conference, NeIC2024, TallinnTallinn, Estonia, 27 May 2024 - 29 May 20242024-05-272024-05-29
Springer 1-15 () [10.34734/FZJ-2024-03386] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint  ;  ;  ;  ;  ;  ;  ;
VRoot: An XR-Based Application for Manual Root System Architecture Reconstruction
bioRxiv beta () [10.1101/2024.06.13.598253] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Hands-On Plant Root System Reconstruction in Virtual Reality
30th ACM Symposium on Virtual Reality Software and Technology : [Proceedings] - ACM New York, NY, USA, 2024. - ISBN 9798400705359 - doi:10.1145/3641825.3689494
VRST '24: 30th ACM Symposium on Virtual Reality Software and Technology, Trier GermanyTrier Germany, Germany, 9 Oct 2024 - 11 Oct 20242024-10-092024-10-11
ACM New York, NY, USA 1-2 () [10.1145/3641825.3689494]   Download fulltextFulltext BibTeX | EndNote: XML, Text | RIS

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From Covalent Docking to QM/MM Simulations: A continuous Pipeline using Snakemake
24th European Symposium on Quantitative Structure-Activity Relationship - Synergizing AI and Multiscale Modeling for Drug Discovery, EuroQSAR 2024, RWTH AachenBarcelona, RWTH Aachen, Spain, 22 Sep 2024 - 26 Sep 20242024-09-222024-09-26 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (Invited)  ;  ;  ;  ;  ;  ;
From Covalent Docking to QM/MM Simulations: A continuous Pipeline using Snakemake
INM-9 Internal Workshop 2024, RWTH AachenLandgraaf, RWTH Aachen, Netherlands, 28 Oct 2024 - 29 Oct 20242024-10-282024-10-29 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (After Call)  ;  ;  ;  ;  ;  ;
From Covalent Docking to QM/MM Simulations: A continuous Pipeline using Snakemake
INM Retreat 2024, RWTH AachenJülich, RWTH Aachen, Germany, 19 Nov 2024 - 20 Nov 20242024-11-192024-11-20 BibTeX | EndNote: XML, Text | RIS

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Data-Driven Approaches to Rational Design of Covalent Drugs
Annual HDS-LEE Retreat, RWTH AachenJülich, RWTH Aachen, Germany, 9 Sep 2024 - 10 Sep 20242024-09-092024-09-10 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (Standard)
Refactoring data pipelines using containerization and continuous integration
Conference for Research Software Engineeris in Germany: deRSE24, Würzburg, 2024, Julius-Maximilians-Universität WürzburgWürzburg, Julius-Maximilians-Universität Würzburg, Germany, 5 Mar 2024 - 7 Mar 20242024-03-052024-03-07 [10.34734/FZJ-2024-02859] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint  ;  ;  ;  ;  ;  ;  ;  ;  ;
Retrieval of sun-induced plant fluorescence in the O$_2$-A absorption band from DESIS imagery
arXiv () [10.48550/ARXIV.2411.08925] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Leveraging a large-scale radiative transfer simulation for an emulator based retrieval scheme of sun-induced fluorescence in HyPlant imagery
13th EARSeL Workshop on Imaging Spectroscopy, EARSeL2024, ValenciaValencia, Spain, 16 Apr 2024 - 18 Apr 20242024-04-162024-04-18 [10.34734/FZJ-2024-06511] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Towards fast and sensor-independent retrieval of sun-induced fluorescence fromspaceborne hyperspectral data
3rd WORKSHOP ON INTERNATIONAL COOPERATION IN SPACEBORNE IMAGING SPECTROSCOPY, WICSIS 2024, NoordwijkNoordwijk, Netherlands, 13 Nov 2024 - 15 Nov 20242024-11-132024-11-15 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (After Call)  ;  ;  ;  ;  ;  ;  ;  ;  ;
Deep Learning Based Prediction of Sun-Induced Fluorescence from HyPlant Imagery
German Conference on Pattern Recognition 2024, GCPR 2024, University of BonnMunich, University of Bonn, Germany, 10 Sep 2024 - 13 Sep 20242024-09-102024-09-13 [10.34734/FZJ-2024-06602] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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A Multi-Layer Perceptron Approach for SIF Retrieval in the O2-A Absorption band from Hyperspectral Imagery of the HyPlant Airborne Sensor System
BibTeX | EndNote: XML, Text | RIS

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EAP4EMSIG - Experiment automation pipeline for event-driven microscopy to smart microfluidic single-cells analysis
34. Workshop Computational Intelligence, BerlinBerlin, Germany, 21 Nov 2024 - 22 Nov 20242024-11-212024-11-22 Karlsruhe : KIT Scientific Publishing 169-192 p. () [10.5445/KSP/1000174544] BibTeX | EndNote: XML, Text | RIS

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Towards event-driven microscopy for smart microfluidic single-cell analysis
Helmholtz Imaging Conference, HeidelbergHeidelberg, Germany, 14 May 2024 - 15 May 20242024-05-142024-05-15 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint  ;  ;  ;  ;  ;  ;  ;  ;  ;  ;  ;  ;  ;  ;
EAP4EMSIG -- Experiment Automation Pipeline for Event-Driven Microscopy to Smart Microfluidic Single-Cells Analysis
arXiv () [10.48550/ARXIV.2411.05030] BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article  ;  ;  ;  ;  ;  ;  ;
A scalable pipeline to create synthetic datasets from functional–structural plant models for deep learning
In silico plants 6(1), diad022 () [10.1093/insilicoplants/diad022] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Book/Dissertation / PhD Thesis  ;  ;  ;  ;
Prediction of Magnetic Materials for Energy and Information Combining Data-Analytics and First-Principles Theory
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Reihe Schlüsseltechnologien / Key Technologies 288, xv, 215 () [10.34734/FZJ-2024-06074] = Dissertation, RWTH Aachen University, 2024 OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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METhodological RadiomICs Score (METRICS): a quality scoring tool for radiomics research endorsed by EuSoMII
Insights into imaging 15(1), 8 () [10.1186/s13244-023-01572-w] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Refining computer tomography data with super-resolution networks to increase the accuracy of respiratory flow simulations
Future generation computer systems 159, 474 - 488 () [10.1016/j.future.2024.05.020] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Physics-based Machine Learning Emulator of At-sensor Radiances for Solar-induced Fluorescence Retrieval in the O-A Absorption Band
IEEE journal of selected topics in applied earth observations and remote sensing 17, 18566 - 18576 () [10.1109/JSTARS.2024.3457231] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Contribution to a conference proceedings/Contribution to a book  ;  ;  ;
Robust Approximate Characterization of Single-Cell Heterogeneity in Microbial Growth
2024 IEEE International Symposium on Biomedical Imaging (ISBI), AthensAthens, Greece, 27 May 2024 - 30 May 20242024-05-272024-05-30 IEEE 1-5 () [10.1109/ISBI56570.2024.10635267]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint  ;  ;  ;  ;
Parameter-efficient Bayesian Neural Networks for Uncertainty-aware Depth Estimation
arXiv () [10.48550/ARXIV.2409.17085] OpenAccess  Download fulltext Files  Download fulltextFulltext BibTeX | EndNote: XML, Text | RIS

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hopsy - a methods marketplace for convex polytope sampling in Python
Bioinformatics 40(7), 1-5 () [10.1093/bioinformatics/btae430] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (After Call)  ;  ;  ;
A probabilistic framework for calibrated cell tracking
I2K – From Images to Knowledge, MilanoMilano, Italy, 24 Oct 2024 - 24 Oct 20242024-10-242024-10-24 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (After Call)  ;  ;  ;  ;
Parameter-efficient Bayesian neural networks for uncertainty-aware depth estimation
3rd Workshop on Uncertainty Quantification for Computer Vision, at the 18th European Conference on Computer Vision ECCV 2024, MilanoMilano, Italy, 29 Sep 2024 - 4 Oct 20242024-09-292024-10-04 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (After Call)  ;  ;  ;  ;  ;
Parameter-efficient Bayesian neural networks for uncertainty-aware computer vision
Helmholtz AI Conf 2024, DüsseldorfDüsseldorf, Germany, 12 Jun 2024 - 14 Jun 20242024-06-122024-06-14 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Conference Presentation (After Call)  ;  ;  ;
Robust approximate characterization of single-cell heterogeneity in microbial growth
2024 IEEE International Symposium on Biomedical Imaging, ISBI, AthenAthen, Greece, 27 May 2024 - 30 May 20242024-05-272024-05-30 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Lecture (Other)  ;
Explainable AI in Medical Image Analysis
Lecture at Informatica Feminale (Germany), 19 Aug 2024 - 21 Aug 20242024-08-192024-08-21 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Conference Presentation (After Call)  ;  ;  ;  ;  ;  ;
Multi-Source Auxiliary Tasks supported Monocular Depth Estimation
Helmholtz AI Conference, DüsseldorfDüsseldorf, Germany, 12 Jun 2024 - 14 Jun 20242024-06-122024-06-14 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Journal Article  ;  ;  ;  ;  ;  ;  ;
ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud
SoftwareX 26, 101638 - () [10.1016/j.softx.2024.101638] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (After Call)  ;  ;  ;  ;  ;  ;
Automated quantitative analysis for microbial live-cell imaging with real-time feedback
Topic 7 Fall Meeting, JülichJülich, Germany, 28 Oct 2024 - 30 Oct 20242024-10-282024-10-30 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Proceedings  ;  ;  ;  ;  ;  ;  ;  ;
Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustnes metrics
BioImage Computing Workshop at the the 18th European Conference on Computer Vision ECCV 2024, MilanoMilano, Italy, 29 Sep 2024 - 4 Oct 20242024-09-292024-10-04 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (After Call)  ;  ;  ;  ;  ;  ;  ;  ;  ;  ;  ;  ;
SATOMI and EMSIG: Power couple for revolutionizing microbial live-cell experiments
Helmholtz Incubator Workshop, BerlinBerlin, Germany, 27 Nov 2024 - 27 Nov 20252024-11-272025-11-27 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (After Call)  ;  ;  ;  ;  ;  ;  ;
Smart Microscopy - Exploiting real-time information for microbial growth control
EPFL LATSIS Symposium on Smart Microscopy, LausanneLausanne, Switzerland, 21 Oct 2024 - 22 Oct 20242024-10-212024-10-22 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (After Call)  ;  ;  ;  ;  ;  ;
mAIcroscopy: Democratizing smart AI microscopes for real-time live-cell analysis
EMBO/EMBL Symposium: AI and biology, HeidelbergHeidelberg, Germany, 12 Mar 2024 - 15 Mar 20242024-03-122024-03-15 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Conference Presentation (After Call)  ;  ;  ;  ;  ;  ;  ;  ;  ;  ;
Live-cell mAIcroscopy - Cracking the challenge to image living cells with real-time event attention
Helmholtz Imaging Conference, HeidelbergHeidelberg, Germany, 14 May 2024 - 15 May 20242024-05-142024-05-15 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Conference Presentation (After Call)  ;  ;  ;  ;  ;  ;  ;  ;
Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustnes metrics
BioImage Computing Workshop at the the 18th European Conference on Computer Vision ECCV 2024, MilanoMilano, Italy, 29 Sep 2024 - 4 Oct 20242024-09-292024-10-04 BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Preprint  ;  ;
Equivariant Representation Learning for Augmentation-based Self-Supervised Learning via Image Reconstruction
arXiv () [10.48550/arXiv.2412.03314] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Poster (After Call)  ;  ;
Equivariant Representation Learning for Augmentation-based Self-Supervised Learning via Image Reconstruction
The Thirty-Eighth Annual Conference on Neural Information Processing Systems Workshop: Self-Supervised Learning - Theory and Practice, NeurIPS 2024, VancouverVancouver, Canada, 10 Dec 2024 - 15 Dec 20242024-12-102024-12-15 [10.34734/FZJ-2025-00462] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

http://join2-wiki.gsi.de/foswiki/pub/Main/Artwork/join2_logo100x88.png Contribution to a conference proceedings  ;  ;
Equivariant Representation Learning for Augmentation-based Self-Supervised Learning via Image Reconstruction
The Thirty-Eighth Annual Conference on Neural Information Processing Systems Workshop: Self-Supervised Learning - Theory and Practice, VancouverVancouver, Canada, 10 Dec 2024 - 15 Dec 20242024-12-102024-12-15 12 pp. () [10.34734/FZJ-2025-00547] OpenAccess  Download fulltext Files  Download fulltextFulltext BibTeX | EndNote: XML, Text | RIS

Letzte Änderung: 04.12.2024