IAS-8 publications 2024
Contribution to a conference proceedings/Contribution to a book
Adapting Agricultural Virtual Environments in Game Engines to Improve HPC Accessibility
Communications in Computer and Information Science
nordic e-Infrastructure Collaboration Conference, NeIC2024, TallinnTallinn, Estonia, 27 May 2024 - 29 May 2024
Springer 1-15 (2024) [10.34734/FZJ-2024-03386]
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Preprint
VRoot: An XR-Based Application for Manual Root System Architecture Reconstruction
bioRxiv beta (2024) [10.1101/2024.06.13.598253]
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Contribution to a conference proceedings/Contribution to a book
Hands-On Plant Root System Reconstruction in Virtual Reality
30th ACM Symposium on Virtual Reality Software and Technology : [Proceedings] - ACM New York, NY, USA, 2024. - ISBN 9798400705359 - doi:10.1145/3641825.3689494
VRST '24: 30th ACM Symposium on Virtual Reality Software and Technology, Trier GermanyTrier Germany, Germany, 9 Oct 2024 - 11 Oct 2024
ACM New York, NY, USA 1-2 (2024) [10.1145/3641825.3689494]
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Poster (After Call)
From Covalent Docking to QM/MM Simulations: A continuous Pipeline using Snakemake
24th European Symposium on Quantitative Structure-Activity Relationship - Synergizing AI and Multiscale Modeling for Drug Discovery, EuroQSAR 2024, RWTH AachenBarcelona, RWTH Aachen, Spain, 22 Sep 2024 - 26 Sep 2024
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Poster (Invited)
From Covalent Docking to QM/MM Simulations: A continuous Pipeline using Snakemake
INM-9 Internal Workshop 2024, RWTH AachenLandgraaf, RWTH Aachen, Netherlands, 28 Oct 2024 - 29 Oct 2024
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Poster (After Call)
From Covalent Docking to QM/MM Simulations: A continuous Pipeline using Snakemake
INM Retreat 2024, RWTH AachenJülich, RWTH Aachen, Germany, 19 Nov 2024 - 20 Nov 2024
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Talk (non-conference) (Invited)
Data-Driven Approaches to Rational Design of Covalent Drugs
Annual HDS-LEE Retreat, RWTH AachenJülich, RWTH Aachen, Germany, 9 Sep 2024 - 10 Sep 2024
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Poster (Standard)
Refactoring data pipelines using containerization and continuous integration
Conference for Research Software Engineeris in Germany: deRSE24, Würzburg, 2024, Julius-Maximilians-Universität WürzburgWürzburg, Julius-Maximilians-Universität Würzburg, Germany, 5 Mar 2024 - 7 Mar 2024
[10.34734/FZJ-2024-02859]
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Preprint
Retrieval of sun-induced plant fluorescence in the O$_2$-A absorption band from DESIS imagery
arXiv (2024) [10.48550/ARXIV.2411.08925]
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Conference Presentation (After Call)
Leveraging a large-scale radiative transfer simulation for an emulator based retrieval scheme of sun-induced fluorescence in HyPlant imagery
13th EARSeL Workshop on Imaging Spectroscopy, EARSeL2024, ValenciaValencia, Spain, 16 Apr 2024 - 18 Apr 2024
[10.34734/FZJ-2024-06511]
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Poster (After Call)
Towards fast and sensor-independent retrieval of sun-induced fluorescence fromspaceborne hyperspectral data
3rd WORKSHOP ON INTERNATIONAL COOPERATION IN SPACEBORNE IMAGING SPECTROSCOPY, WICSIS 2024, NoordwijkNoordwijk, Netherlands, 13 Nov 2024 - 15 Nov 2024
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Poster (After Call)
Deep Learning Based Prediction of Sun-Induced Fluorescence from HyPlant Imagery
German Conference on Pattern Recognition 2024, GCPR 2024, University of BonnMunich, University of Bonn, Germany, 10 Sep 2024 - 13 Sep 2024
[10.34734/FZJ-2024-06602]
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Preprint
A Multi-Layer Perceptron Approach for SIF Retrieval in the O2-A Absorption band from Hyperspectral Imagery of the HyPlant Airborne Sensor System
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Contribution to a conference proceedings/Contribution to a book
EAP4EMSIG - Experiment automation pipeline for event-driven microscopy to smart microfluidic single-cells analysis
34. Workshop Computational Intelligence, BerlinBerlin, Germany, 21 Nov 2024 - 22 Nov 2024
Karlsruhe : KIT Scientific Publishing 169-192 p. (2024) [10.5445/KSP/1000174544]
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Poster (After Call)
Towards event-driven microscopy for smart microfluidic single-cell analysis
Helmholtz Imaging Conference, HeidelbergHeidelberg, Germany, 14 May 2024 - 15 May 2024
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Preprint
EAP4EMSIG -- Experiment Automation Pipeline for Event-Driven Microscopy to Smart Microfluidic Single-Cells Analysis
arXiv (2024) [10.48550/ARXIV.2411.05030]
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Journal Article
A scalable pipeline to create synthetic datasets from functional–structural plant models for deep learning
In silico plants 6(1), diad022 (2024) [10.1093/insilicoplants/diad022]
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Book/Dissertation / PhD Thesis
Prediction of Magnetic Materials for Energy and Information Combining Data-Analytics and First-Principles Theory
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Reihe Schlüsseltechnologien / Key Technologies 288, xv, 215 (2024) [10.34734/FZJ-2024-06074] = Dissertation, RWTH Aachen University, 2024
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Journal Article
METhodological RadiomICs Score (METRICS): a quality scoring tool for radiomics research endorsed by EuSoMII
Insights into imaging 15(1), 8 (2024) [10.1186/s13244-023-01572-w]
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Journal Article
Refining computer tomography data with super-resolution networks to increase the accuracy of respiratory flow simulations
Future generation computer systems 159, 474 - 488 (2024) [10.1016/j.future.2024.05.020]
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Journal Article
Physics-based Machine Learning Emulator of At-sensor Radiances for Solar-induced Fluorescence Retrieval in the O-A Absorption Band
IEEE journal of selected topics in applied earth observations and remote sensing 17, 18566 - 18576 (2024) [10.1109/JSTARS.2024.3457231]
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Contribution to a conference proceedings/Contribution to a book
Robust Approximate Characterization of Single-Cell Heterogeneity in Microbial Growth
2024 IEEE International Symposium on Biomedical Imaging (ISBI), AthensAthens, Greece, 27 May 2024 - 30 May 2024
IEEE 1-5 (2024) [10.1109/ISBI56570.2024.10635267]
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Preprint
Parameter-efficient Bayesian Neural Networks for Uncertainty-aware Depth Estimation
arXiv (2024) [10.48550/ARXIV.2409.17085]
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Journal Article
hopsy - a methods marketplace for convex polytope sampling in Python
Bioinformatics 40(7), 1-5 (2024) [10.1093/bioinformatics/btae430]
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Poster (After Call)
A probabilistic framework for calibrated cell tracking
I2K – From Images to Knowledge, MilanoMilano, Italy, 24 Oct 2024 - 24 Oct 2024
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Poster (After Call)
Parameter-efficient Bayesian neural networks for uncertainty-aware depth estimation
3rd Workshop on Uncertainty Quantification for Computer Vision, at the 18th European Conference on Computer Vision ECCV 2024, MilanoMilano, Italy, 29 Sep 2024 - 4 Oct 2024
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Poster (After Call)
Parameter-efficient Bayesian neural networks for uncertainty-aware computer vision
Helmholtz AI Conf 2024, DüsseldorfDüsseldorf, Germany, 12 Jun 2024 - 14 Jun 2024
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Conference Presentation (After Call)
Robust approximate characterization of single-cell heterogeneity in microbial growth
2024 IEEE International Symposium on Biomedical Imaging, ISBI, AthenAthen, Greece, 27 May 2024 - 30 May 2024
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Lecture (Other)
Explainable AI in Medical Image Analysis
Lecture at Informatica Feminale (Germany), 19 Aug 2024 - 21 Aug 2024
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Conference Presentation (After Call)
Multi-Source Auxiliary Tasks supported Monocular Depth Estimation
Helmholtz AI Conference, DüsseldorfDüsseldorf, Germany, 12 Jun 2024 - 14 Jun 2024
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Journal Article
ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud
SoftwareX 26, 101638 - (2024) [10.1016/j.softx.2024.101638]
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Poster (After Call)
Automated quantitative analysis for microbial live-cell imaging with real-time feedback
Topic 7 Fall Meeting, JülichJülich, Germany, 28 Oct 2024 - 30 Oct 2024
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Proceedings
Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustnes metrics
BioImage Computing Workshop at the the 18th European Conference on Computer Vision ECCV 2024, MilanoMilano, Italy, 29 Sep 2024 - 4 Oct 2024
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Poster (After Call)
SATOMI and EMSIG: Power couple for revolutionizing microbial live-cell experiments
Helmholtz Incubator Workshop, BerlinBerlin, Germany, 27 Nov 2024 - 27 Nov 2025
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Poster (After Call)
Smart Microscopy - Exploiting real-time information for microbial growth control
EPFL LATSIS Symposium on Smart Microscopy, LausanneLausanne, Switzerland, 21 Oct 2024 - 22 Oct 2024
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Poster (After Call)
mAIcroscopy: Democratizing smart AI microscopes for real-time live-cell analysis
EMBO/EMBL Symposium: AI and biology, HeidelbergHeidelberg, Germany, 12 Mar 2024 - 15 Mar 2024
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Conference Presentation (After Call)
Live-cell mAIcroscopy - Cracking the challenge to image living cells with real-time event attention
Helmholtz Imaging Conference, HeidelbergHeidelberg, Germany, 14 May 2024 - 15 May 2024
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Conference Presentation (After Call)
Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustnes metrics
BioImage Computing Workshop at the the 18th European Conference on Computer Vision ECCV 2024, MilanoMilano, Italy, 29 Sep 2024 - 4 Oct 2024
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Preprint
Equivariant Representation Learning for Augmentation-based Self-Supervised Learning via Image Reconstruction
arXiv (2024) [10.48550/arXiv.2412.03314]
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Poster (After Call)
Equivariant Representation Learning for Augmentation-based Self-Supervised Learning via Image Reconstruction
The Thirty-Eighth Annual Conference on Neural Information Processing Systems Workshop: Self-Supervised Learning - Theory and Practice, NeurIPS 2024, VancouverVancouver, Canada, 10 Dec 2024 - 15 Dec 2024
[10.34734/FZJ-2025-00462]
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Contribution to a conference proceedings
Equivariant Representation Learning for Augmentation-based Self-Supervised Learning via Image Reconstruction
The Thirty-Eighth Annual Conference on Neural Information Processing Systems Workshop: Self-Supervised Learning - Theory and Practice, VancouverVancouver, Canada, 10 Dec 2024 - 15 Dec 2024
12 pp. (2024) [10.34734/FZJ-2025-00547]
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