Peer-reviewed publications

2024

  • Gutzen R., De Bonis G., De Luca C., Pastorelli E., Capone C., Mascaro ALA., Resta F., Manasanch A., Pavone FS., Sanchez-Vives MV., Mattia M., Grün S., Paolucci PS., Denker M. (2024) A modular and adaptable analysis pipeline to compare slow cerebral rhythms across heterogeneous datasets Cell Reports Methods 4, 100681
    DOI: 10.1016/j.crmeth.2023.100681

  • Köhler CA., Ulianych D., Grün S., Decker S., Denker M. (2024) Facilitating the Sharing of Electrophysiology Data Analysis Results Through In-Depth Provenance Capture. eneuro 11(6)
    DOI: 10.1523/ENEURO.0476-23.2024

2023

  • Capone C., De Luca C., De Bonis G., Gutzen R., Bernava I., Pastorelli E., Simula F., Lupo C., Tonielli L., Resta F., Allegra Mascaro AL., Pavone F., Denker M., Paolucci PS. (2023) Simulations approaching data: Cortical slow waves in inferred models of the whole hemisphere of mouse. Communications Biology, 6(266).
    DOI: 10.1038/s42003-023-04580-0

  • Gutzen R., Grün S., Denker M. (2023) Evaluating the statistical similarity of neural network activity and connectivity via eigenvector angles. BioSystems 223:104813.
    DOI: 10.1016/j.biosystems.2022.104813

  • Klinger CM., Denker M., Grün S., Hanke M., Oelltze-Jafra S., Ohl FW., Radny J., Rotter S., Scherberger H., Stein A., Wachtler T., Witte OW., Ritter P. (2023) Research Data Management and Data Sharing for Reproducible Research - Results of a Community Survey of the German National Research Data Infrastructure Initiative Neuroscience. eNeuro 10(2).
    DOI: 10.1523/ENEURO.0215-22.2023

2021

  • Denker M., Grün S., Wachtler T., Scherberger H. (2021) Reproducibility and efficiency in handling complex neurophysiological data. Neuroforum 27(1):27-34.
    DOI: 10.1515/nf-2020-0041

  • Porrmann F., Pilz S., Stella A., Kleinjohann A., Denker M., Hagemeyer J., Rückert U. (2021) Acceleration of the SPADE Method Using a Custom-Tailored FP-Growth Implementation. Froniers in Neuroinformatics 15:723406.
    DOI: 10.3389/fninf.2021.723406

  • Wachtler T., Bauer P., Denker M., Grün S., Hanke M., Klein J., Oeltze-Jafra S., Ritter P., Rotter S., Scherberger H., Stein A., Witte OW. (2021) NFDI-Neuro: building a community for neuroscience research data management in Germany. Neuroforum 27(1):3-15.
    DOI: 10.1515/nf-2020-0036

2020

  • Denker M., Stein A., Wachtler T. (2020) Better data - better science: NFDI Neuroscience: an initiative to promote efficient data management for neuroscience. Neuroforum 26(2):119-120.
    DOI: 10.1515/nf-2020-0010

  • Wachtler T., Denker M. and Stein A. (2020) Better data - better science: NFDI Neuroscience: an initiative to promote efficient data management for neuroscience. Neuroforum 26(2): 119-120
    DOI: 10.1515/nf-2020-0010

2019

  • Sprenger J., Zehl L., Pick J., Sonntag M., Grewe J., Wachtler T., Grün S., Denker M. (2019) odMLtables: A User-Friendly Approach for Managing Metadata of Neurophysiological Experiments. Frontiers in Neuroinformatics 13:62.
    DOI: 10.3389/fninf.2019.00062

  • Sukiban J., Voges N., Dembek TA., Pauli R., Visser-Vandewalle V., Denker M., Weber I., Timmermann L., Grün S. (2019) Evaluation of Spike Sorting Algorithms: Application to Human Subthalamic Nucleus Recordings and Simulations. Neuroscience 414: 168-185.
    DOI: 10.1016/j.neuroscience.2019.07.005

2018

  • Brochier T., Zehl L., Hao Y., Duret M., Sprenger J., Denker M., Grün S., Riehle A. (2018) Massively parallel recordings in macaque motor cortex during an instructed delayed reach-to-grasp task. (Data publication) Scientific Data 5:180055.
    DOI: 10.1038/sdata.2018.55.
    Data available at https://web.gin.g-node.org/INT/multielectrode_grasp

  • Denker M., Zehl L., Kilavik BE., Diesmann M., Brochier T., Riehle A., Grün S. (2018) LFP beta amplitude is linked to mesoscopic spatio-temporal phase patterns. Scientific Reports 8:5200.
    DOI: 10.1038/s41598-018-22990-7

  • Gutzen R., von Papen M., Trensch G., Quaglio P., Grün S., Denker M. (2018) Reproducible Neural Network Simulations: Statistical Methods for Model Validation on the Level of Network Activity Data. Frontiers in Neuroinformatics 12:90.
    DOI: 10.3389/fninf.2018.00090

2017

  • Rostami V., Ito J., Denker M., Grün S. (2017) [Re] Spike Synchronization and Rate Modulation Differentially Involved in Motor Cortical Function. ReScience 3(1).
    DOI: 10.5281/zenodo.583814.

  • Senk J., Yegenoglu A., Amblet O., Brukau Y., Davison A., Lester DR., Lührs A., Quaglio P., Rostami V., Rowley A., Schuller B., Stokes AB., van Albada SJ., Zielasko D., Diesmann M., Weyers B., Denker M., Grün S. (2017) A Collaborative Simulation-Analysis Workflow for Computational Neuroscience Using HPC. In: Di Napoli E, Hermanns M-A, Iliev H, Lintermann A, Peyser A eds. High-Performance Scientific Computing. Cham: Springer International Publishing 243–256.
    DOI: 10.1007/978-3-319-53862-4_21.

2016

  • Bouchard KE., Aimone JB., Chun M., Dean T., Denker M., Diesmann M., Donofrio DD., Frank LM., Kasthuri N., Koch C., Ruebel O., Simon HD., Sommer FT., Prabhat (2016) High-Performance Computing in Neuroscience for Data-Driven Discovery, Integration, and Dissemination. Neuron 92:628–631.
    DOI: 10.1016/j.neuron.2016.10.035.

  • Torre E., Canova C., Denker M., Gerstein G., Helias M., Grün S. (2016) ASSET: Analysis of Sequences of Synchronous Events in Massively Parallel Spike Trains. PLoS Computational Biology 12:e1004939.
    DOI: 10.1371/journal.pcbi.1004939.

  • Torre E., Quaglio P., Denker M., Brochier T., Riehle A., Grün S. (2016) Synchronous Spike Patterns in Macaque Motor Cortex during an Instructed-Delay Reach-to-Grasp Task. Journal of Neuroscience 36:8329–8340.
    DOI: 10.1523/JNEUROSCI.4375-15.2016.

  • Zehl L., Jaillet F., Stoewer A., Grewe J., Sobolev A., Wachtler T., Brochier TG., Riehle A., Denker M., Grün S. (2016) Handling Metadata in a Neurophysiology Laboratory. Frontiers in Neuroinformatics 10:26.
    DOI: 10.3389/fninf.2016.00026.

2014

  • Cichon NB., Denker M., Grün S., Hanganu-Opatz IL. (2014) Unsupervised classification of neocortical activity patterns in neonatal and pre-juvenile rodents. Frontiers in Neural Circuits 8:50.
    DOI: 10.3389/fncir.2014.00050.

2013

  • Torre E., Picado-Muiño D., Denker M., Borgelt C., Grün S. (2013) Statistical evaluation of synchronous spike patterns extracted by frequent item set mining. Frontiers in Computational Neuroscience 7:132.
    DOI: 10.3389/fncom.2013.00132

2011

  • Denker M., Roux S., Lindén H., Diesmann M., Riehle A., Grün S. (2011) The local field potential reflects surplus spike synchrony. Cerebral Cortex 21:2681–2695.
    DOI: 10.1093/cercor/bhr040.

2010

  • Denker M., Finke R., Schaupp F., Grün S., Menzel R. (2010) Neural correlates of odor learning in the honeybee antennal lobe. European Journal of Neuroscience 31:119–133.
    DOI: 10.1111/j.1460-9568.2009.07046.x.

  • Denker M., Riehle A., Diesmann M., Grün S. (2010) Estimating the contribution of assembly activity to cortical dynamics from spike and population measures. Journal of Computational Neuroscience 29:599–613.
    DOI: 10.1007/s10827-010-0241-8.
  • Denker M., Finke R., Schaupp F., Grün S., Menzel R. (2010b). Neural correlates of odor learning in the honeybee antennal lobe. European Journal of Neuroscience 31:119–133.
    DOI: 10.1111/j.1460-9568.2009.07046.x.


  • Denker M., Riehle A., Diesmann M., Grün S. (2010a). Estimating the contribution of assembly activity to cortical dynamics from spike and population measures. Journal of Computational Neuroscience 29:599–613.
    DOI: 10.1007/s10827-010-0241-8.


2009

  • Sharott A., Moll CKE., Engler G., Denker M., Grün S., Engel AK. (2009) Different subtypes of striatal neurons are selectively modulated by cortical oscillations. Journal of Neuroscience 29:4571–4585.
    DOI: 10.1523/JNEUROSCI.5097-08.2009.

2007

  • Denker M., Roux S., Timme M., Riehle A., Grün S. (2007) Phase synchronization between lfp and spiking activity in motor cortex during movement preparation. Neurocomputing 70:2096–2101.
    DOI: 10.1016/j.neucom.2006.10.088.

Last Modified: 18.12.2024