Complete publication list of the SDL Molecular Systems
Contribution to a conference proceedings/Contribution to a book
Dynamics of polymer electrolyte with LiTFSI via Quasi-Elastic Neutron Scattering
European Conference on Neutron Scattering 2023, ECNS 2023, GarchingGarching, Germany, 20 Mar 2023 - 23 Mar 2023
The European physical journal / Web of Conferences 286, 04005 pp. (2023) [10.1051/epjconf/202328604005]
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Kokkos-Based Implementation of MPCD on Heterogeneous Nodes
International Conference on Parallel Processing and Applied Mathematics, PPAM 2022, GdanskGdansk, Poland, 11 Sep 2022 - 14 Sep 2022
Cham : Springer International Publishing, Lecture Notes in Computer Science 13827, 3-13 (2023) [10.1007/978-3-031-30445-3_1]
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Journal Article
Using heterogeneous GPU nodes with a Cabana-based implementation of MPCD
Parallel computing 117, 103033 (2023) [10.1016/j.parco.2023.103033]
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Journal Article
Parallel hybrid Monte Carlo / Molecular Statics for Simulation of Solute Segregation in Solids
Journal of physics / Conference Series 1740(1), 012001 (2021) [10.1088/1742-6596/1740/1/012001]
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Journal Article
Towards blood flow in the virtual human: efficient self-coupling of HemeLB
Interface focus 11(1), 20190119 - (2021) [10.1098/rsfs.2019.0119]
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Journal Article
The generality of the GUGA MRCI approach in COLUMBUS for treating complex quantum chemistry
The journal of chemical physics 152(13), 134110 - (2020) [10.1063/1.5144267]
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Journal Article
TURBOMOLE: Modular program suite for ab initio quantum-chemical and condensed-matter simulations
The journal of chemical physics 152(18), 184107 - (2020) [10.1063/5.0004635]
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Journal Article
Kokkos implementation of an Ewald Coulomb solver and analysis of performance portability
Journal of parallel and distributed computing 138, 48 - 54 (2020) [10.1016/j.jpdc.2019.12.003]
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Contribution to a conference proceedings/Contribution to a book
Examining Performance Portability with Kokkos for an Ewald Sum Coulomb Solver
Parallel Processing and Applied Mathematics, PPAM19, BialystokBialystok, Poland, 8 Sep 2019 - 11 Sep 2019
Cham : Springer, Lecture Notes in Computer Science 12044, 35-45 (2020) [10.1007/978-3-030-43222-5_4]
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Contribution to a conference proceedings/Contribution to a book
A Consistent Boundary Method for the Material Point Method - Using Image Particles to Reduce Boundary Artefacts
VI International Conference on Particle Based Methods: Fundamentals and Applications, BarcelonaBarcelona, Spain, 28 Oct 2019 - 30 Oct 2019
Barcelona, Spain : International Centre for Numerical Methods in Engineering (CIMNE) 522 - 531 (2019)
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Multi-Level Load Balancing for Parallel Particle Simulations
VI International Conference on Particle-based Methods–Fundamentals and Applications, BarcelonaBarcelona, Spain, 28 Oct 2019 - 30 Oct 2019
Barcelona, Spain : International Centre for Numerical Methods in Engineering (CIMNE) 80 - 92 (2019)
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Journal Article
Optimized parallel simulations of analytic bond-order potentials on hybrid shared/distributed memory with MPI and OpenMP
The international journal of high performance computing applications 32(2), 227 - 241 (2019) [10.1177/1094342017727060]
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Journal Article
Spontaneous Fluctuations in Mesoscopic Simulations of Nematic Liquid Crystals
Fluctuation and noise letters 18(3), 1950011 (2019) [10.1142/S0219477519500111]
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Contribution to a book
MC/MD Coupling for Scale Bridging Simulations of Solute Segregation in Solids: An Application Study
Berlin : Springer, Communications in computer and information science 889, 112-127 (2018) [10.1007/978-3-319-96271-9_7]
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Journal Article
Parallelization comparison and optimization of a scale-bridging framework to model Cottrell atmospheres
Computational materials science 155, 439 - 449 (2018) [10.1016/j.commatsci.2018.08.055]
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Contribution to a conference proceedings/Contribution to a book
Benchmarking Molecular Dynamics with OpenCL on Many-Core Architectures
Parallel Processing and Applied Mathematics / Wyrzykowski, Roman (Editor) [0000-0003-1724-1786] ; Cham : Springer International Publishing, 2018, Chapter 23 ; ISSN: 0302-9743=1611-3349 ; ISBN: 978-3-319-78053-5=978-3-319-78054-2 ; doi:10.1007/978-3-319-78054-2
12th International Conference on Parallel Processing and Applied Mathematics, PPAM 2017, LublinLublin, Poland, 10 Sep 2017 - 13 Sep 2017
Cham : Springer International Publishing, Lecture Notes in Computer Science 10778, 244 - 253 (2018) [10.1007/978-3-319-78054-2_23]
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Journal Article
Function portability of molecular dynamics on heterogeneous parallel architectures with OpenCL
The journal of supercomputing 74(4), 1522 - 1533 (2018) [10.1007/s11227-017-2232-2]
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Contribution to a conference proceedings/Contribution to a book
Cluster formation in stochastic disk systems
International Confernece of Numerical Analysis and Applied Mathematics, ICNAAM 2016, RhodesRhodes, Greece, 19 Sep 2016 - 25 Sep 2016
Melville, NY : Inst., AIP conference proceedings 1863, 560089 pp. (2017) [10.1063/1.4992772]
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Contribution to a conference proceedings/Contribution to a book
Towards a Flexible Cell-based Framework for Parallel Scale-Bridging Simulations in Materials Science: a First Case Study
Proceedings of the Fifth International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering, P. Iványi, B.H.V. Topping, G. Várady, (Editors), ISBN 978-1-905088-66-9
The Fifth International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering, PARENG 2017, PecsPecs, Hungary, 30 May 2017 - 31 May 2017
Stirlingshire, UK : Civil-Comp Press, Civil-Comp Proceedings 111, 24 pp. (2017) [10.4203/ccp.111.24]
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Journal Article
Local Electron Correlation Treatment in Extended Multireference Calculations: Effect of Acceptor–Donor Substituents on the Biradical Character of the Polycyclic Aromatic Hydrocarbon Heptazethrene
Journal of chemical theory and computation 13(6), 2612 - 2622 (2017) [10.1021/acs.jctc.7b00156]
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Journal Article
Parallel multiphase field simulations with OpenPhase
Computer physics communications 215, 173 - 187 (2017) [10.1016/j.cpc.2017.01.023]
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Contribution to a conference proceedings/Contribution to a book
Performance Optimization of Parallel Applications in Diverse On-Demand Development Teams
High-Performance Scientific Computing / Di Napoli, Edoardo (Editor) ; Cham : Springer International Publishing, 2017, Chapter 16 ; ISSN: 0302-9743=1611-3349 ; ISBN: 978-3-319-53861-7=978-3-319-53862-4 ; doi:10.1007/978-3-319-53862-4
First JARA-HPC Symposium 2016, JHPCS'16, AachenAachen, Germany, 4 Oct 2016 - 5 Oct 2016
Cham : Springer International Publishing, Lecture Notes in Computer Science 10164, 187 - 199 (2017) [10.1007/978-3-319-53862-4_16]
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Journal Article
Polymer conformations in ionic microgels in the presence of salt: Theoretical and mesoscale simulation results
Polymers 9(1), 15 (2017) [10.3390/polym9010015]
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Contribution to a conference proceedings/Contribution to a book
The Mont-Blanc Prototype: An Alternative Approach for HPC Systems
Proceedings of the International Conference for High Performance Computing, Networking, Storage and Analysis
SC '16, Salt Lake City, UtahSalt Lake City, Utah, USA, 13 Nov 2016 - 18 Nov 2016
Piscataway, NJ, USA : IEEE Press 444-455 (2016) [10.1109/SC.2016.37]
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Contribution to a conference proceedings/Contribution to a book
Green’s function enriched Poisson solver for electrostatics in many-particle systems
International Conference of Numerical Analysis and Applied Mathematics 2015, ICNAAM 2015, RhodesRhodes, Greece, 22 Sep 2015 - 29 Sep 2015
Melville : American Institute of Physics, AIP Conference Proceedings 1738, 480092 pp. (2016) [10.1063/1.4952328]
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Journal Article
Complexity analysis of simulations with analytic bond-order potentials
Modelling and simulation in materials science and engineering 24(2), 025008 - (2016) [10.1088/0965-0393/24/2/025008]
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Journal Article
Efficient parallelization of analytic bond-order potentials for large-scale atomistic simulations
Computer physics communications 204, 64 - 73 (2016) [10.1016/j.cpc.2016.03.008]
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Journal Article
Molcas 8: New capabilities for multiconfigurational quantum chemical calculations across the periodic table
Journal of computational chemistry 37(5), 506 - 541 (2016) [10.1002/jcc.24221]
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Journal Article
Polyradical Character of Triangular Non-Kekulé Structures, Zethrenes, p -Quinodimethane-Linked Bisphenalenyl, and the Clar Goblet in Comparison: An Extended Multireference Study
The journal of physical chemistry <Washington, DC> / A 120(9), 1625 - 1636 (2016) [10.1021/acs.jpca.5b12393]
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Contribution to a conference proceedings
Multi-threaded Construction of Neighbour Lists for Particle Systems in OpenMP
Parallel Processing and Applied Mathematics / Wyrzykowski, Roman (Editor), ISBN: 978-3-319-32151-6=978-3-319-32152-3
11th International Conference on Parallel Processing and Applied Mathematics, PPAM 2015, KrakowKrakow, Poland, 6 Sep 2015 - 9 Sep 2015
Cham : Springer International Publishing, Lecture Notes in Computer Science 9574, 153 - 165 (2016) [10.1007/978-3-319-32152-3_15]
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Journal Article
Hydrodynamics in adaptive resolution particle simulations: Multiparticle collision dynamics
Journal of computational physics 314, 14 - 34 (2016) [10.1016/j.jcp.2016.02.065]
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Contribution to a conference proceedings
Parallel Bond Order Potentials for Materials Science Simulations
The Fourth International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering, DubrovnikDubrovnik, Croatia, 24 Mar 2015 - 27 Mar 2015
Stirlingshire, UK : Civil-Comp Press Paper 4 (2015) [10.4203/ccp.107.4]
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Contribution to a conference proceedings
Massively Parallel Multiphase Field Simulations
The Fourth International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering, DubrovnikDubrovnik, Croatia, 24 Mar 2015 - 27 Mar 2015
Stirlingshire, UK : Civil-Comp Press Paper 5 (2015) [10.4203/ccp.107.5]
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Journal Article
Large scale Molecular Dynamics simulation of microstructure formation during thermal spraying of pure copper
Surface and coatings technology 280, 72 - 80 (2015) [10.1016/j.surfcoat.2015.08.034]
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Journal Article
Adaptive dynamic load-balancing with irregular domain decomposition for particle simulations
Computer physics communications 190, 51 - 61 (2015) [10.1016/j.cpc.2015.01.009]
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Journal Article
The Mont-Blanc Project: First Phase successfully finished
Innovatives Supercomputing in Deutschland 13(2), 54-57 (2015)
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Journal Article
Retrospective of International Jülich CECAM School on Computational Trends in Solvation and Transport in Liquids
Innovatives Supercomputing in Deutschland 13(1), 110-111 (2015)
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Proceedings/Book
Computational Trends in Solvation and Transport in Liquids - Lecture Notes
Jülich CECAM School "Computational Trends in Solvation and Transport in Liquids", STL 2015, JülichJülich, Germany, 23 Mar 2015 - 27 Mar 2015
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich. IAS Series 28, vi, 614 S. (2015)
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Journal Article
Monte Carlo Simulations of the Magnetic Behavior, Ordering Temperature and Magnetocaloric Effects in 1D, 2D and 3D Ferrimagnetic Systems
Journal of nanoscience and nanotechnology 15(1), 263 - 268 (2015) [10.1166/jnn.2015.8416]
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Journal Article
Photo-double-ionization of ethylene and acetylene near threshold
Physical review / A 89(1), 013403 (2014) [10.1103/PhysRevA.89.013403]
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Journal Article
Jülich School on Computational Trends in Solvation and Transport in Liquids
Innovatives Supercomputing in Deutschland 12(2), 95-96 (2014)
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Journal Article
Perturbational treatment of spin-orbit coupling for generally applicable high-level multi-reference methods
The journal of chemical physics 141(7), 074105 (2014) [10.1063/1.4892060]
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Journal Article
A comparison of singlet and triplet states for one- and two-dimensional graphene nanoribbons using multireference theory
Theoretical chemistry accounts 133(8), 1511 (2014) [10.1007/s00214-014-1511-8]
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Journal Article
Study of the Diradicaloid Character in a Prototypical Pancake-Bonded Dimer: The Stacked Tetracyanoethylene (TCNE) Anion Dimer and the Neutral K_2TCNE_2 Complex
ChemPhysChem 15(1), 165 - 176 (2014) [10.1002/cphc.201300784]
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Book/Proceedings
Hybrid Particle-Continuum Methods in Computational Materials Physics - Proceedings
Hybrid Particle-Continuum Methods in Computational Materials Physics, JülichJülich, Germany, 4 Mar 2013 - 7 Mar 2013
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, NIC Series 46, ii, 232 S. (2013)
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Journal Article
The Multiradical Character of One- and Two-Dimensional Graphene Nanoribbons
Angewandte Chemie / International edition 52(9), 2581 - 2584 (2013) [10.1002/anie.201207671]
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Journal Article
Nonadiabatic Photodynamics of a Retinal Model in Polar and Nonpolar Environment
The journal of physical chemistry <Washington, DC> / A 117(13), 2790 - 2799 (2013) [10.1021/jp400401f]
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Journal Article
Hydrogen bond network topology in liquid water and methanol: a graph theory approach
Physical chemistry, chemical physics 15(36), 15163 - 15171 (2013) [10.1039/c3cp52271g]
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Journal Article
Comparison of scalable fast methods for long-range interactions
Physical review / E 88(6), 063308 (2013) [10.1103/PhysRevE.88.063308]
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Contribution to a conference proceedings/Contribution to a book
GASPI – A Partitioned Global Address Space Programming Interface
Facing the Multicore-Challenge III / Keller, Rainer (editor); Kramer, David (editor); Weiss, Jan-Philipp (editor); Berlin, Heidelberg : Springer Berlin Heidelberg, 2013, Chapter 18 ; ISSN: 0302-9743=1611-3349 ; ISBN: 978-3-642-35892-0=978-3-642-35893-7 ; doi:10.1007/978-3-642-35893-7
Facing the Multicore-Challenge, StuttgartStuttgart, Germany, 19 Sep 2012 - 21 Sep 2012
Berlin, Heidelberg : Springer Berlin Heidelberg, Lecture notes in computer science 7686, 135 - 136 (2013) [10.1007/978-3-642-35893-7_18]
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Contribution to a conference proceedings/Contribution to a book
Parallel Brownian Dynamics Simulation with MPI, OpenMP and UPC
Hybrid Particle-Continuum Methods in Computational Materials Physics
Hybrid Particle-Continuum Methods in Computational Materials Physics, JülichJülich, Germany, 4 Mar 2013 - 7 Mar 2013
Jülich : John von Neumann Institute for Computing (NIC), NIC Series 46, 25 - 40 (2013)
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Journal Article
Parallel simulation of Brownian dynamics on shared memory systems with OpenMP and Unified Parallel C
The journal of supercomputing 65(3), 1050 - 1062 (2013) [10.1007/s11227-012-0843-1]
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Journal Article
Parallel Brownian dynamics simulations with the message-passing and PGAS programming models
Computer physics communications 184(4), 1191-1202 (2013) [10.1016/j.cpc.2012.12.015]
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Journal Article
CECAM Tutorials at JSC
Innovatives Supercomputing in Deutschland 11(2), 100 (2013)
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Proceedings/Book
Multiscale Modelling Methods for Applications in Materials Science
CECAM Tutorial on Multiscale Modelling Methods for Applications in Materials Science, JülichJülich, Germany, 16 Sep 2013 - 20 Sep 2013
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich. IAS Series 19, 319 S. (2013)
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Journal Article
Ultrafast non-adiabatic dynamics of ethylene including Rydberg states
Molecular physics 111, 1 - 12 (2013) [10.1080/00268976.2013.813590]
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Proceedings/Book
Hybrid Particle-Continuum Methods in Computational Materials Physics
Workshop on Hybrid Particle-Continuum Methods in Computational Materials Physics, HYBRID2013, JülichJülich, Germany, 4 Mar 2013 - 7 Mar 2013
Jülich : John von Neumann Institute for Computing (NIC), NIC Series 46, 232 p. (2013)
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Journal Article
Theoretical study of the reaction of LiBH4 with MgH2 in presence of carbon substrate
Revue roumaine de chimie 57(4-5), 435-442 (2012)
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Book
Hierarchical Methods for Dynamics in Complex Molecular Systems
Jülich : Forschungszentrum Jülich GmbH Zentralbibliiothek, Verlag, Schriften des Forschungszentrums Jülich. IAS Series 10, VI, 540 S. (2012)
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Journal Article
Strikingly Different Effects of Hydrogen Bonding on the Photodynamics of Individual Nucleobases in DNA: Comparison of Guanine and Cytosine
Journal of the American Chemical Society 134, 13662 - 13669 (2012) [10.1021/ja3028845]
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Journal Article
Interaction between graphene and the surface of SiO2
Journal of physics / Condensed matter 24, 305004 (2012) [10.1088/0953-8984/24/30/305004]
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Journal Article
Multiconfiguration Self-Consistent Field and Multireference Configuration Interaction Methods and Applications
Chemical reviews 112, 108 - 181 (2012) [10.1021/cr200137a]
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Journal Article
CECAM - Jülich Summer School on Fast Methods for Long-Range Interactions in Complex Systems
Innovatives Supercomputing in Deutschland: inSiDE 9(2), 84 (2011)
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Book
Fast Methods for Long-Range Interactions in Complex Systems
Jülich : Forschungszentrum Jülich Gmbh Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich. IAS Series 6, (2011)
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Journal Article
Jülich established as CECAM Node
Innovatives Supercomputing in Deutschland: inSiDE 9(1), 13 (2011)
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Journal Article
Columbus - a program system for advanced multireference theory calculations
Wiley Interdisciplinary Reviews: Computational Molecular Science 1, 191 - 199 (2011) [10.1002/wcms.25]
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Journal Article
Fast Methods for Long-Range Interactions in Complex Systems
Physik-Journal 10, 62 (2011)
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Contribution to a conference proceedings/Contribution to a book
Multiparticle Collision Dynamics on the Cell Broadband Engine using CellSs
CCP 95, Proceedings of the Second International Conference on Parallel, Distributed, Grid and Cloud Computing for Engineering, ed./: P. Iványi, B.H.V. Topping, Civil-Comp Press, Stirlingshire, UK, 2011. - Paper 69
[10.4203/ccp.95.69]
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Journal Article
Tumbling of polymers in semidilute solution under shear flow
epl 93, 54004 (2011) [10.1209/0295-5075/93/54004]
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Contribution to a conference proceedings/Contribution to a book
Classical Particle Simulations
Fast Methods for Long-Range Interactions in Complex Systems, ed.; / G. Sutmann, P. Gibbon, T. Lippert, Summer School, 6-10 September 2010, Jülich, Schriften des Forschungszentrums Jülich. - IAS Series, Volume 6, 2011. - 978-3-89336-714-6. - S. 1 - 38
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Journal Article
Hydrodynamic fluctuations in thermostatted multiparticle collision dynamics
Physical review / E 83(4), 046708 (2011) [10.1103/PhysRevE.83.046708]
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Journal Article
Matrix-controlled photofragmentation of formamide: dynamics simulation in argon by nonadiabatic QM/MM method
Physical Chemistry Chemical Physics 12, 12719 - 12726 (2010) [10.1039/c0cp00174k]
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Journal Article
Azomethane: Nonadiabatic Photodynamical Simulations in Solution
The journal of physical chemistry <Washington, DC> / A 114, 12585 - 12590 (2010) [10.1021/jp108844g]
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Journal Article
Summer School on Fast Methods for Long-Range Interactions in Complex Systems
Innovatives Supercomputing in Deutschland: inSiDE 8(2), 64 (2010)
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Journal Article
Semidilute Polymer Solutions at Equilibrium and under Shear Flow
Macromolecules 43, 10107 - 10116 (2010) [10.1021/ma101836x]
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Contribution to a conference proceedings/Contribution to a book
Particle Based Simulations of Complex Systems with MP2C: Hydrodynamics and Electrostatics
ICNAAM 2010: International Conference of Numerical Analysis and Applied Mathematics 2010, AIP Conference Proceedings, Vol. 1281, Issue 1, 2010. - 978-0-7354-0834-0. - S. 1768 - 1772
[10.1063/1.3498216]
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Contribution to a conference proceedings/Contribution to a book
Particle Methods on Multicore Architectures: Experiences and Future Plans
ICNAAM 2010: International Conference of Numerical Analysis and Applied Mathematics 2010, AIP Conference Proceedings, Vol. 1281, Issue 1, 2010. - 978-0-7354-0834-0. - S. 1797 -1800
[10.1063/1.3498233]
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Journal Article
Does Stacking Restrain the Photodynamics of Individual Nucleobases?
Journal of the American Chemical Society 132, 8261 - 8263 (2010) [10.1021/ja1029705]
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Journal Article
The effect of hydration on the photo-deactivation pathways of 4-aminopyrimidine
Chemical physics 375, 110 - 117 (2010) [10.1016/j.chemphys.2010.07.034]
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Journal Article
Ab Initio Study of the VUV-Induced Multistate Photodynamics of Formaldehyde
The journal of physical chemistry <Washington, DC> / A 114, 11436 - 11449 (2010) [10.1021/jp106777z]
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Journal Article
Toward an Improved Ground State Potential Energy Surface of Ozone
The journal of physical chemistry <Washington, DC> / A 114, 9927 - 9935 (2010) [10.1021/jp104182q]
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Journal Article
Nonadiabatic Excited-State Dynamics with Hybrid ab Initio Quantum-Mechanical/Molecular-Mechanical Methods: Solvation of the Pentadieniminium Cation in Apolar Media
The journal of physical chemistry <Washington, DC> / A 114, 6757 - 6765 (2010) [10.1021/jp103101t]
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Utilizing High Performance Computing for Chemistry: Parallel Computational Chemistry
Physical Chemistry Chemical Physics 12, 6896 - 6920 (2010) [10.1039/c002859b]
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Master Thesis
Adaptives Lastbalance-Verfahren für Gebietszerlegung in der Molekulardynamik
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Berichte des Forschungszentrums Jülich 4323, 78, VI p. (2010) = Aachen, FH, Campus Jülich, Masterarbeit
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Mesoscopic Simulations of Hydrodynamic Interactions Using a Particle-Based Model on Cell Broadband Engine
Mitteilungen - Gesellschaft für Informatik e.V., Parallel-Algorithmen und -Rechnerstrukturen, Nr. 26, Dezember 2009, S. 17 - 26
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Semidilute Polymer Systems under Shear Flow
NIC Symposium 2010, / ed.: G. Münster, D. Wolf, M. Kremer, Jülich, Forschungszentrum Jülich, IAS Series Vol. 3. - 978-3-89336-606-4. - S. 287 - 294
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Extending scalability of MP2C to more than 250k compute core
Jülich Blue Gene/P Extreme Scaling Workshop 2009, / ed.: B. Mohr, W. Frings, Jülich, Jülich Supercomputing Centre, Technical Report FZJ-JSC-IB-2010-02, February 2010. - S. 21 - 26
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Cell-level canonical sampling by velocity scaling for multiparticle collision dynamics simulations
Journal of computational physics 229, 168 - 177 (2010) [10.1016/j.jcp.2009.09.024]
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High Throughput Parallel-I/O using SIONlib for Mesoscopic Particle Dynamics Simulations on Massively Parallel Computers
Parallel Computing: From Multicores and GPU's to Petascale, / ed.: B. Chapman, F. Desprez, G.R. Joubert, A. Lichnewsky, F. Peters and T. Priol, Amsterdam, IOS Press, 2010. Advances in Parallel Computing Volume 19. - 978-1-60750-529-7. - S. 371 - 378
[10.3233/978-1-60750-530-3-371]
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Rigid molecule approximation in memory function-based models for molecular liquids: Application to liquid water
Zeitschrift für Physikalische Chemie 223, 957 - 978 (2009) [10.1524/zpch.2009.6063]
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Large-Scale Parallel Multireference-Averaged Quadratic Coupled Cluster: The Ground State of the Chromium Dimer Revisited
The journal of physical chemistry <Washington, DC> / A 113, 12729 - 12740 (2009) [10.1021/jp905254u]
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Journal Article
Kein Mangel an Rechenzeit
Nachrichten aus der Chemie 57, 663 - 666 (2009) [10.1002/nadc.200966342]
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ScaFaCoS - when Long Range Goes Parallel
Innovatives Supercomputing in Deutschland: inSiDE 7(1), 58 - 59 (2009)
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Molecular Dynamics - Extending the Scale from Microscopic to Mesoscopic
NIC Series Volume 42 : Multiscale Simulation Methods in Molecular Sciences, Lecture Notes, Johannes Grotendorst, Norbert Attig, Stefan Blügel, Dominik Marx, chapter 1, p. 1-49, Jülich : John von Neumann Institute for Computing, 2009. ISBN: 978-3-9810843-8-2
Jülich : John von Neumann Institute for Computing, NIC series 42, 1-49 (2009)
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Parallel 2d-Wavelet Transform on the Cell/B.E. for Fast Calculation of Coulomb Potentials
NIC Series Volume 40 : From Computational Biophysics to Systems Biology (CBSB08), Ulrich H. E. Hansmann, Jan H. Meinke, Sandipan Mohanty, Walter Nadler, Olav Zimmermann (Editors), chapter 91, p. 385-388, Jülich : John von Neumann Institute for Computing, 2008. ISBN: 978-3-9810843-6-8
Jülich : John von Neumann Institute for Computing, NIC series 40, 385-388 (2008)
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Communication and Load Balancing of Force-Decomposition Algorithms for Parallel Molecular Dynamics
Parallel Computing : Architectures, Algorithms and Applications / ed.: C. Bischof, M. Bücker, P. Gibbon, G. Joubert, T. Lippert, B. Mohr, F. Peters. - Amsterdam, IOS Press, 2008. - 978-1-58603-796-3. - S. 45 - 52
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Book
Untersuchungen der Auger-Emitter abhängigen biologischen Wirksamkeit zur Ermittlung des Strahlungs-Wichtungsfaktors für Auger-Elektronen
Bonn : Bundesministerium für Umwelt, Naturschutz und Reaktorsicherheit, Schriftenreihe Reaktorsicherheit und Strahlenschutz (2008)
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Scaling laws and memory effects in the dynamics of liquids and proteins
Physics of particles and nuclei letters 5, 189 - 195 (2008) [10.1134/S1547477108030114]
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Journal Article
Monte Carlo estimates of interfacial tension in the two-dimensional Ising model from non-equilibrium methods
Journal of statistical mechanics: theory and experiment P07012 (2008) [10.1088/1742-5468/2008/07/P07012]
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Probability distributions of Hamiltonian changes in linear magnetic systems under discontinuous perturbations
Journal of statistical mechanics: theory and experiment P05009 (2008) [10.1088/1742-5468/2008/05/P05009]
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A Fast Wavelet Based Implementation to Calculate Coulomb Potentials on the Cell/B.E.
High Performance Computing and Communications 2008 : HPCC '08 ; 10th IEEE International Conference on High Performance Computing and Communications. - IEEE, 2008. - 978-0-7695-3352-0. - S. 162 - 168
[10.1109/HPCC.2008.9]
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The Accuracy of Molecular Bond Lengths Computed by Multireference Electronic Structure Methods
Chemical physics 349, (2008) [10.1016/j.chemphys.2008.03.009]
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Parallel Molecular Dynamics Simulations
JULI Project - Final Report / ed.: U. Detert, A. Thomasch, N. Eicker, J. Broughton. - Jülich, Forschungszentrum, Zentralinstitut für Angewandte Mathematik, 2007. - (FZJ-ZAM-IB-2007-05). - S. 26 - 28
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Contribution to a book
Communication and Load Balancing of Force-Decomposition Algorithms for Parallel Molecular Dynamics
NIC Series Volume 38: Parallel Computing: Architectures, Algorithms and Applications, Proceedings, ParCo 2007 Conference 4. - 7. September 2007, C. Bischof, M. Bücker, P. Gibbon, G.R. Joubert, T. Lippert, B. Mohr, F. Peters (Eds.), chapter 5, p. 45-52, Jülich : John von Neumann Institute for Computing, 2007. ISBN: 978-3-9810843-4-4
Jülich : John von Neumann Institute for Computing, NIC series 38, 45-52 (2007)
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Surface diffusion of particles adsorbed on an inhomogeneous lattice with two non-equivalent sites
Surface science 601, 4001 - 4004 (2007) [10.1016/j.susc.2007.04.030]
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Communication and Load Balancing of Force-Decomposition Algorithms for Parallel Molecular Dynamics
Parallel Computing : Architectures, Algorithms and Applications ; Book of Abstracts of the International Conference ParCo 2007 / ed.: G. R. Joubert, C. Bischof, F. J. Peters, T. Lippert, M. Bücker, P. Gibbon, B. Mohr. - Jülich, FZJ, John von Neumann Institute for Computing, 2007. - (NIC series ; 37). - 978-3-9810843-3-7. - S. 18
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Contribution to a book
A Load Balanced Force-Domain Decomposition Algorithm for Parallel Molecular Dynamics Simulations
NIC Series Volume 36: From Computational Biophysics to Systems Biology (CBSB07), Ulrich H. E. Hansmann, Jan Meinke, Sandipan Mohanty, Olav Zimmermann (Editors), chapter 60, p. 279-282, Jülich : John von Neumann Institute for Computing, 2007. ISBN: 978-3-9810843-2-0
Jülich : John von Neumann Institute for Computing, NIC series 36, 279-282 (2007)
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Journal Article
Non-equilibrium work theorems for the two-dimensional Ising model
Journal of statistical mechanics: theory and experiment 2007, P04010 (2007) [10.1088/1742-5468/2007/04/P04010]
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Journal Article
Modeling diffusion on heterogeneous lattices: Derivation of general analytical expressions and verification for a two-dimensional square lattice
Physical review / B 75(8), 085401 (2007) [10.1103/PhysRevB.75.085401]
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On the ground and some low-lying excited states of ScB: A multiconfigurational study
The journal of chemical physics 126, 214311 (2007) [10.1063/1.2741522]
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Compact Finite Difference Schemes of Sixth Order for the Helmholtz Equation
Journal of Computational and Applied Mathematics 203, 15 - 31 (2007) [10.1016/j.cam.2006.03.008]
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Divergence-Free Description of Molecular Rotation in Cartesian Coordinates: The Axis-Rotation Formula and some of its Applications to Computational Chemistry
Revue roumaine de chimie 52, (2007)
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NFFT based extension of a particle simulation method using multigrid
Proceedings in applied mathematics and mechanics 7, 2140005 - 2140006 (2007) [10.1002/pamm.200700223]
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Atom diffusion in a simple cubic lattice: Real-space renormalization group and Monte Carlo calculations
Physical review / B 73(24), 245419 (2006) [10.1103/PhysRevB.73.245419]
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Clar's sextet rule is a consequence of the sigma-electron framework
The journal of physical chemistry <Washington, DC> / A 110, 10135 - 10147 (2006) [10.1021/jp062917b]
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Contribution to a book
A Highly Accurate and Optimal Method to Calculate Long Range Interactions
NIC Series Volume 34 : NIC Workshop: From Computational Biophysics to Systems Biology 2006, Ulrich H.E. Hansmann, Jan Meinke, Sandipan Mohanty, Olav Zimmermann (Editors), chapter 40, Jülich : John von Neumann Institute for Computing, pp. 189-192. ISBN: ISBN
Seminar, JülichJülich, 14 Feb 2006
Jülich : John von Neumann Institute for Computing, NIC series 34, 224 p. (2006)
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A Fast Wavelet Based Evaluation of Coulomb Potentials in Molecular Systems
NIC Series Volume 34 : NIC Workshop: From Computational Biophysics to Systems Biology 2006, Ulrich H.E. Hansmann, Jan Meinke, Sandipan Mohanty, Olav Zimmermann (Editors), chapter 39, Jülich : John von Neumann Institute for Computing, pp. 185-188. ISBN: 3-9810843-0-6
Jülich : John von Neumann Institute for Computing, NIC series 34, 224 p. (2006)
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A High Accurate and Optimal Method to Calculate Long Range Interactions
From Computational Biophysics to Systems Biology 2006 / ed.: U. H. E. Hansmann, J. Meinke, S. Mohanty, O. Zimmermann. - Jülich, John von Neumann Institut für Computing, 2006. - (NIC-series ; 34). - 3-9810843-0-6, 978-3-9810843-0-6. - S. 189 - 192
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Journal Article
Role of effective atomic masses in memory function-based models for liquids: A simulation study of liquid water
The journal of chemical physics 125, 236102 (2006) [10.1063/1.2403877]
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Modern Electron Correlation Methods in Quantum Chemistry
Computational Condensed Matter Physics : Lecture Manuscripts of the 37th Spring School of the Institute of Solid State Research ; this spring school was organized by the Institute of Solid State Research in the Forschungszentrum Jülich on March 6 -17, 2006 / ed.: S. Blügel, G. Gompper, E. Koch, H. Müller-Krumbhaar, R. Spatschek, R. G. Winkler. - Jülich, 2006. - (Schriften des Forschungszentrums Jülich . Reihe Materie und Material / Matter and Material ; 32). - 3-89336-430-7. - S. A10.1 - A10.15
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Journal Article
Optimization of neighbor list techniques in liquid matter simulations
Journal of molecular liquids 125, (2006) [10.1016/j.molliq.2005.11.029]
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Contribution to a book
Molecular Dynamics - Vision and Reality
NIC Series Volume 31 : Computational Nanoscience: Do It Yourself!Lecture Notes, Johannes Grotendorst, Stefan Blügel, Dominik Marx, chapter 7, p. 159-194, Jülich : John von Neumann Institute for Computing, 2006. ISBN: 3-00-017350-1
Jülich : John von Neumann Institute for Computing, NIC series 31, 159-194 (2006)
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Basis Sets, Accuracy, and Calibration in Quantum Chemistry
NIC Series Volume 31 : Computational Nanoscience: Do It Yourself!Lecture Notes, Johannes Grotendorst, Stefan Blügel, Dominik Marx, chapter 2, p. 19-43, Jülich : John von Neumann Institute for Computing, 2006. ISBN: 3-00-017350-1
Jülich : John von Neumann Institute for Computing, NIC series 31, 19-43 (2006)
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High-order compact solvers for the three-dimensional Poisson equation
Journal of Computational and Applied Mathematics 187, 142 - 170 (2006) [10.1016/j.cam.2005.03.041]
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Two-dimensional chiral model for liquid crystals, bent hard needles: a Monte Carlo simulation
The journal of chemical physics 125, 104908 (2006) [10.1063/1.2338313]
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A Novel Approach in Analyzing Aromaticity by Homo- and Isostructural Reactions: An ab Initio Study of Fluorobenzenes
The journal of physical chemistry <Washington, DC> / A 109, 10594 (2005) [10.1021/jp0532871]
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A particle-particle particle-multigrid algorithm for long range interactions in molecular systems
Computer physics communications 169, 343 - 346 (2005) [10.1016/j.cpc.2005.03.077]
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Is Coulomb explosion a damaging mechanism for 125-IUdR?
International Journal of Radiation Biology 80, (2004) [10.1080/09553000400017614]
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Coulomb hole in N2, CO and O2 deduced from X-ray scattering cross-sections
Molecular physics 102, 649 - 657 (2004) [10.1080/0026897041001695697]
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Solvent effects in electronically excited states using the continuum solvation model COSMO in combination with multireference configuration interaction with single and doubles (MR-CISD)
Theoretical chemistry accounts 111, (2004) [10.1007/s00214-003-0530-7]
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Parallel DFT in TURBOMOLE, Linear Algebra
High Performance Computing in Chemistry / ed.: J. Grotendorst. - Jülich, FZJ, John von Neumann Institute for Computing, 2004. - (NIC series ; 25). - 3-00-013618-5. - S. 83 - 107
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Journal Article
The Origin of Aromaticity: Important Role of the Sigma Framework in Benzene
ChemPhysChem 5, 1352 - 1364 (2004) [10.1002/cphc.200400061]
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Dominant Role of the pi Framework in Cyclobutadiene
The journal of physical chemistry <Washington, DC> / A 108, 9126 - 9133 (2004) [10.1021/jp0489626]
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Journal Article
Scaling of the Memory Function and Brownian Motion
The journal of chemical physics 120, 1667 - 1669 (2004) [10.1063/1.1642599]
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Wird I-125UdR durch Coulomb-Explosion zerstört?
Proceedings der 7. Jahrestagung der Gesellschaft für Biologische Strahlenforschung / G. Taucher-Scholz. - Darmstadt, 2004. - 3-00-013476-X. - S. 1
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Journal Article
Mass and size effects of the memory function of tracer particles
The journal of chemical physics 118, 5283 - 5286 (2003) [10.1063/1.1562620]
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Collective dynamics of liquid HCl: The density and longitudinal current correlations
The journal of chemical physics 118, 202 - 208 (2003) [10.1063/1.1524620]
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Journal Article
Potential-energy surfaces for charge exchange between singly charged ions and a LiF surface
Physical review / A 68(3), 032902 (2003) [10.1103/PhysRevA.68.032902]
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Valence and Rydberg states of protonated formaldehyde
Chemical physics letters 374, 587 - 593 (2003) [10.1016/0009-2614(03)00770-X]
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MR-CISD and MR-AQCC calculation of excited states of Malonaldehyde: Geometry optimizations using analytical energy gradient methods and a systematic investigation of reference configuration sets
Collection of Czechoslovak chemical communications 68, 447 - 462 (2003) [10.1135/cccc20030447]
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Contribution to a book
Classical Molecular Dynamics
NIC Series Volume 10 : Quantum Simulations of Complex Many-Body Systems: From Theory to Algorithms, Lecture Notes, edited by Johannes Grotendorst, Dominik Marx, Alejandro Muramatsu, chapter 9, p. 211-254, Jülich : John von Neumann Institute for Computing, 2002. ISBN: 3-00-009057-6
Jülich : John von Neumann Institute for Computing, NIC series 10, 211-254 (2002)
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Contribution to a book
Long-Range Interactions in Many-Particle Simulation
NIC Series Volume 10 : Quantum Simulations of Complex Many-Body Systems: From Theory to Algorithms, Lecture Notes, edited by Johannes Grotendorst, Dominik Marx, Alejandro Muramatsu, chapter 20, p. 467-506, Jülich : John von Neumann Institute for Computing, 2002. ISBN: 3-00-009057-6
Jülich : John von Neumann Institute for Computing, NIC series 10, 467-506 (2002)
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Journal Article
Dynamical properties of hydrogen bonded liquids
Journal of molecular liquids 96-97, 19 - 29 (2002) [10.1016/S0167-7322(01)00323-3]
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Dynamics of the hydrogen bond network in liquid water
Journal of molecular liquids 98/99, 215 - 226 (2002) [10.1016/S0167-7322(01)00320-8]
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Electron correlation effects in N2 and CO studied by X-ray scattering and CISD calculations
Molecular physics 100, 2839 - 2847 (2002) [10.1080/00268970210125359]
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Instantaneous normal mode analysis of correlated cluster motions in hydrogen bonded liquids
The journal of chemical physics 117, 3278 - 3288 (2002) [10.1063/1.1493775]
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Time and length scales for diffusion in liquids
Physical review / E 65(6), 060201 (2002) [10.1103/PhysRevE.65.060201]
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Correction of finite size effects in molecular dynamics applied to the friction coefficient of a Brownian particle
Computer physics communications 147, 374 - 377 (2002) [10.1016/S0010-4655(02)00308-9]
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Phase behaviour of columnar DNA assemblies
Physical review letters 89, 18303 - 18307 (2002) [10.1103/PhysRevLett.89.018303]
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The collective dynamical properties of HCl : the transverse current correlations
The journal of chemical physics 114, 8467 - 8472 (2001) [10.1063/1.1352643]
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Molecular dynamics algorithms for massively parallel systems
Workshop on Molecular Dynamics on Parallel Computers : John von Neumann Institute for Computing Research Centre Jülich 8. - 10. Febr. 1999 / ed. by Rüdiger Esser .... - Singapore, 2000. - 981-02-4232-8. - S. 46 - 69
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CRAY T3E and parallel molecular dynamics algorithms
Workshop on Molecular Dynamics on Parallel Computers : John von Neumann Institute for Computing (NIC) ; Research Centre Jülich, Germany, 8-10 February 1999 / ed.: R. Esser ... - Singapore, 2000. - 981-02-4232-8. - S. 348 - 351
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DMMD : a modular molecular dynamics program für MPP-systems
5th SGI/CRAY MPP Workshop : Bologna, 9.-10.9.1999
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Analysis of single molecule dynamics in liquid HF
Chemical physics letters 315, 109 - 114 (1999) [10.1016/S0009-2614(99)01161-6]
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Computer simulation of the nonlocal dielectric of polar liquids : boundary conditions revisited
Molecular physics 96, 1781 - 1788 (1999) [10.1080/00268979909483121]
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Nonlocal dielectric function of water : how strong are the effects of intramolecular charge form factors?
Journal of molecular liquids 82, 151 - 160 (1999) [10.1016/S0167-7322(99)00049-5]
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Velocity correlations in liquid hydrogen fluoride
The journal of chemical physics 111, 4663 - 4671 (1999) [10.1063/1.479228]
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