Publications of VSR Projects 2025

auf der Heiden, Franca ; Axer, Markus ; Amunts, Katrin ; Menzel, Miriam
Scattering polarimetry enables correlative nerve fiber imaging and multimodal analysis
Scientific Reports 15, 18493 (2025), 10.1038/s41598-025-02762-w

Bagchi, Mahasweta ; Rüßmann, Philipp ; Bihlmayer, Gustav ; Blügel, Stefan ; Ando, Yoichi ; Brede, Jens
Quasiparticle interference on the surface of Bi2Se3-terminated (PbSe)5(Bi2Se3)6
Physical Review B 112, (2025), 10.1103/h8v9-sl53

Buffat, Jim ; Pato, Miguel ; Alonso, Kevin ; Auer, Stefan ; Carmona, Emiliano ; Maier, Stefan ; Müller, Rupert ; Rademske, Patrick ; Siegmann, Bastian ; Rascher, Uwe ; Scharr, Hanno
A multi-layer perceptron approach for SIF retrieval in the O_2-A absorption band from hyperspectral imagery of the HyPlant airborne sensor system
Remote Sensing of Environment 318, 114596 (2025), 10.1016/j.rse.2024.114596

Clark, L. ; McKinnon, B. ; Ireland, D. G. ; Glazier, D. I. ; Livingston, K. ; Rönchen, D. ; Acar, A. G. ; Achenbach, P. ; Alvarado, J. S. ; Amaryan, M. J. ; Armstrong, W. R. ; Atac, H. ; Baashen, L. ; Barion, L. ; Battaglieri, M. ; Benkel, B. ; Benmokhtar, F. ; Bianconi, A. ; Biselli, A. S. ; Booth, W. A. ; Bossù, F. ; Brinkmann, K.-Th. ; Briscoe, W. J. ; Brooks, W. K. ; Bueltmann, S. ; Cao, T. ; Capobianco, R. ; Carman, D. S. ; Celentano, A. ; Chatagnon, P. ; Ciullo, G. ; Cole, P. L. ; Contalbrigo, M. ; D'Angelo, A. ; Dashyan, N. ; De Vita, R. ; Defurne, M. ; Deur, A. ; Diehl, S. ; Djalali, C. ; Dugger, M. ; Dupre, R. ; Egiyan, H. ; El Alaoui, A. ; El Fassi, L. ; Eugenio, P. ; Fegan, S. ; Ferguson, R. F. ; Filippi, A. ; Fogler, C. ; Gates, K. ; Gavalian, G. ; Gilfoyle, G. P. ; Golubenko, A. A. ; Gothe, R. W. ; Guidal, M. ; Hakobyan, H. ; Hattawy, M. ; Hauenstein, F. ; Hayward, T. B. ; Heddle, D. ; Hobart, A. ; Holtrop, M. ; Isupov, E. L. ; Jenkins, D. ; Jiang, H. ; Jo, H. S. ; Keller, D. ; Khandaker, M. ; Kim, W. ; Klein, F. J. ; Klimenko, V. ; Kripko, A. ; Kubarovsky, V. ; Lanza, L. ; Lenisa, P. ; Li, X. ; MacGregor, I. J. D. ; Marchand, D. ; Mascagna, V. ; Matamoros, D. ; Migliorati, S. ; Mokeev, V. ; Munoz Camacho, C. ; Nadel-Turonski, P. ; Neupane, K. ; Niccolai, S. ; Niculescu, G. ; Osipenko, M. ; Pandey, P. ; Paolone, M. ; Pappalardo, L. L. ; Paremuzyan, R. ; Pasyuk, E. ; Paul, S. J. ; Phelps, W. ; Pilleux, N. ; Pokhrel, M. ; Polcher Rafael, S. ; Prok, Y. ; Reed, T. ; Richards, J. ; Ripani, M. ; Ritchie, B. G. ; Ritman, J. ; Rosner, G. ; Salgado, C. ; Schadmand, S. ; Schmidt, A. ; Schumacher, R. A. ; Sharabian, Y. G. ; Shirokov, E. V. ; Shrestha, U. ; Sokhan, D. ; Sparveris, N. ; Spreafico, M. ; Stepanyan, S. ; Strakovsky, I. I. ; Strauch, S. ; Tan, J. A. ; Tenorio, M. ; Trotta, N. ; Tyson, R. ; Ungaro, M. ; Venturelli, L. ; Voskanyan, H. ; Voutier, E. ; Watts, D. P. ; Wei, X. ; Williams, R. ; Xu, L. ; Zachariou, N. ; Zhao, Z. W. ; Zurek, M. ; The CLAS Collaboration
Photoproduction of the Σ+ hyperon using linearly polarized photons with CLAS
Physical Review C 111, (2025), 10.1103/PhysRevC.111.025204

Jennings, Dylan ; Weber, Moritz L. ; Meise, Ansgar ; Binninger, Tobias ; Price, Conor J. ; Kindelmann, Moritz ; Reimanis, Ivar ; Matsumoto, Hiroaki ; Cao, Pengfei ; Dittmann, Regina ; Kowalski, Piotr M. ; Heggen, Marc ; Guillon, Olivier ; Mayer, Joachim ; Gunkel, Felix ; Rheinheimer, Wolfgang
Direct atomic-scale investigation of the coarsening mechanisms of exsolved catalytic Ni nanoparticles
Nature Communications 16, (2025), 10.1038/s41467-025-61971-z

Jung, Kyesam ; Wischnewski, Kevin J. ; Eickhoff, Simon B. ; Popovych, Oleksandr V.
Effective workflow from multimodal MRI data to model-based prediction
Scientific Reports 15, (2025), 10.1038/s41598-025-04511-5

Karyofylli, Violeta ; Raman, K. Ashoke ; Hammacher, Linus ; Danner, Yannik ; Kungl, Hans ; Karl, André ; Jodat, Eva ; Eichel, Rüdiger‐A.
Elucidating Parasitic Currents in Proton‐Exchange‐Membrane Electrolytic Cells via Physics‐Based and Data‐Driven Modeling
Electrochemical Science Advances 5, (2025), 10.1002/elsa.70000

Kerkmann, David ; Korf, Sascha ; Nguyen, Khoa ; Abele, Daniel ; Schengen, Alain ; Gerstein, Carlotta ; Göbbert, Jens Henrik ; Basermann, Achim ; Kühn, Martin J. ; Meyer-Hermann, Michael
Agent-based modeling for realistic reproduction of human mobility and contact behavior to evaluate test and isolation strategies in epidemic infectious disease spread
Computers in Biology and Medicine 193, 110269 (2025), 10.1016/j.compbiomed.2025.110269

Knispel, Timo ; Tseplyaev, Vasily ; Bihlmayer, Gustav ; Blügel, Stefan ; Michely, Thomas ; Fischer, Jeison
Atomic-scale Dzyaloshinskii-Moriya-modified Yoshimori spirals in an Fe double layer on Ir(110)
Physical Review B 111, (2025), 10.1103/PhysRevB.111.L020405

Kostritskii, Andrei Y. ; Kostritskaia, Yulia ; Dmitrieva, Natalia ; Stauber, Tobias ; Machtens, Jan-Philipp
Calcium-activated chloride channel TMEM16A opens via pi-helical transition in transmembrane segment 4
Proceedings of the National Academy of Sciences 122, e2421900122 (2025), 10.1073/pnas.2421900122

Kostritskii, Andrei Y. ; Kostritskaia, Yulia ; Dmitrieva, Natalia ; Stauber, Tobias ; Machtens, Jan-Philipp
Calcium-activated chloride channel TMEM16A opens via pi-helical transition in transmembrane segment 4
Proceedings of the National Academy of Sciences 122, (2025), 10.1073/pnas.2421900122

Le, Hoai ; Haidenbauer, Johann ; Kamada, Hiroyuki ; Kohno, Michio ; Meißner, Ulf-G. ; Miyagawa, Kazuya ; Nogga, Andreas
Benchmarking ΛNN three-body forces and first predictions for A=3−5 hypernuclei
The European Physical Journal A 61, 21 (2025), 10.1140/epja/s10050-024-01474-5

Melnikov, Nataly ; Junglas, Benedikt ; Halbi, Gal ; Nachmias, Dikla ; Zerbib, Erez ; Gueta, Noam ; Upcher, Alexander ; Zalk, Ran ; Sachse, Carsten ; Bernheim-Groswasser, Anne ; Elia, Natalie
The Asgard archaeal ESCRT-III system forms helical filaments and remodels eukaryotic-like membranes
The EMBO Journal 44, 665-681 (2025), 10.1038/s44318-024-00346-4

Morizumi, Takefumi ; Kim, Kyumhyuk ; Li, Hai ; Nag, Probal ; Dogon, Tal ; Sineshchekov, Oleg A. ; Wang, Yumei ; Brown, Leonid S. ; Hwang, Songhwan ; Sun, Han ; Bondar, Ana-Nicoleta ; Schapiro, Igor ; Govorunova, Elena G. ; Spudich, John L. ; Ernst, Oliver P.
Structural insights into light-gating of potassium-selective channelrhodopsin
Nature Communications 16, (2025), 10.1038/s41467-025-56491-9

Othman, Sameh ; Midya, Jiarul ; Auth, Thorsten ; Gompper, Gerhard
Phase behavior and dynamics of active Brownian particles in an alignment field
Physical Review E 111, 015425 (2025), 10.1103/PhysRevE.111.015425

Overberg, Florian A. ; Jamshidi Khameneh, Narges ; Krüger, Timothy ; Engstler, Markus ; Gompper, Gerhard ; Fedosov, Dmitry A.
Modelling motility of Trypanosoma brucei
PLOS Computational Biology 21, e1013111 (2025), 10.1371/journal.pcbi.1013111

Pandeya, Ram Prakash ; Shchukin, Konstantin P. ; Falke, Yannic ; Mussler, Gregor ; Jalil, Abdur Rehman ; Atodiresei, Nicolae ; Hasdeo, Eddwi H. ; Fedorov, Alexander ; Senkovskiy, Boris V. ; Jansen, Daniel ; Di Santo, Giovanni ; Petaccia, Luca ; Grüneis, Alexander
Molecular Order Induced Charge Transfer in a C60-Topological Insulator Moiré Heterostructure
Nano Letters 25, 1220-1225 (2025), 10.1021/acs.nanolett.4c06294

Poppe Terán, Christian ; Naz, Bibi S. ; Vereecken, Harry ; Baatz, Roland ; Fisher, Rosie A. ; Hendricks Franssen, Harrie-Jan
Systematic underestimation of type-specific ecosystem process variability in the Community Land Model v5 over Europe
Geoscientific Model Development 18, 287-317 (2025), 10.5194/gmd-18-287-2025

Raman, K. Ashoke ; Hammacher, Linus ; Kungl, Hans ; Karl, André ; Jodat, Eva ; Eichel, Rüdiger-A. ; Karyofylli, Violeta
Data-driven surrogate modeling for performance prediction and sensitivity analysis of transport properties in proton exchange membrane water electrolyzers
Applied Energy 386, 125529 (2025), 10.1016/j.apenergy.2025.125529

Rauland, Amelie ; Jung, Kyesam ; Satterthwaite, Theodore D. ; Cieslak, Matthew ; Reetz, Kathrin ; Eickhoff, Simon B. ; Popovych, Oleksandr V.
Weak and unstable prediction of personality from the structural connectome
Imaging Neuroscience 3, (2025), 10.1162/imag_a_00416

Sangelantoni, L. ; Sobolowski, S. P. ; Soares, P. M. M. ; Goergen, K. ; Cardoso, R. M. ; Adinolfi, M. ; Dobler, A. ; Katragkou, E. ; Scoccimarro, E. ; Ferretti, R. ; Tölle, M. ; Feldmann, H.
Heatwave Future Changes From an Ensemble of Km‐Scale Regional Climate Simulations Within CORDEX‐FPS Convection
Geophysical Research Letters 52, e2024GL111147 (2025), 10.1029/2024GL111147

Santoso, Ryan ; Guignon, Lisa ; Deissmann, Guido ; Poonoosamy, Jenna
Investigating the metastability of amorphous calcium carbonate by droplet microfluidics experiments using machine learning
Scientific Reports 15, (2025), 10.1038/s41598-025-05984-0

Schönnenbeck, Philipp ; Junglas, Benedikt ; Sachse, Carsten
CryoVIA: An image analysis toolkit for the quantification of membrane structures from cryo-EM micrographs
Structure 33, 808-819.e4 (2025), 10.1016/j.str.2025.01.013

Sciortino, Alfredo ; Faizi, Hammad A. ; Fedosov, Dmitry A. ; Frechette, Layne ; Vlahovska, Petia M. ; Gompper, Gerhard ; Bausch, Andreas R.
Active membrane deformations of a minimal synthetic cell
Nature Physics 21, 799-807 (2025), 10.1038/s41567-025-02839-3

Skaar, Jan-Eirik Welle ; Haug, Nicolai ; Plesser, Hans Ekkehard
A simplified model of NMDA-receptor-mediated dynamics in leaky integrate-and-fire neurons
Journal of Computational Neuroscience 53, 475-487 (2025), 10.1007/s10827-025-00911-8

Wischnewski, Kevin J. ; Jarre, Florian ; Eickhoff, Simon B. ; Popovych, Oleksandr V.
Exploring dynamical whole-brain models in high-dimensional parameter spaces
PLOS One 20, e0322983 (2025), 10.1371/journal.pone.0322983

Witzler, Christian ; Guimarães, Filipe Souza Mendes ; Mira, Daniel ; Anzt, Hartwig ; Göbbert, Jens Henrik ; Frings, Wolfgang ; Bode, Mathis
JuMonC: A RESTful tool for enabling monitoring and control of simulations at scale
Future Generation Computer Systems 164, 107541 (2025), 10.1016/j.future.2024.107541

Wu-Zhang, Bohan ; Zhang, Peixin ; Baillou, Renaud ; Lindner, Anke ; Clement, Eric ; Gompper, Gerhard ; Fedosov, Dmitry A.
Run-and-tumble dynamics of Escherichia coli is governed by its mechanical properties
Journal of The Royal Society Interface 22, (2025), 10.1098/rsif.2025.0035

Xie, Song ; Zuo, Ke ; De Rubeis, Silvia ; Bonollo, Giorgio ; Colombo, Giorgio ; Ruggerone, Paolo ; Carloni, Paolo
Impact of Genetic Variants Associated with Neurodevelopmental Disorders on the WAVE Regulatory Complex
Journal of Chemical Information and Modeling 65, 7399-7405 (2025), 10.1021/acs.jcim.5c01162

Yu, Jun Ho ; Köster, Konstantin ; Voronina, Natalia ; Kim, Sungkyu ; Shin, Hyeon-Ji ; Kim, Kyung Sun ; Ihm, Kyuwook ; Kim, Hyungsub ; Jung, Hun-Gi ; Yazawa, Koji ; Guillon, Olivier ; Gargiani, Pierluigi ; Simonelli, Laura ; Kaghazchi, Payam ; Myung, Seung-Taek
Elevating Li-ion battery paradigms: sophisticated ionic architectures in lithium-excess layered oxides for unprecedented electrochemical performance
eScience , 100376 (2025), 10.1016/j.esci.2025.100376

Zhang, Guoren ; Hadipour, Hanif ; Pavarini, Eva
Nature of the high-pressure insulating state in Sr2IrO4: Mott picture
Physical Review B 111, (2025), 10.1103/PhysRevB.111.L121101

Zhang, Shufei ; Jung, Kyesam ; Langner, Robert ; Florin, Esther ; Eickhoff, Simon B. ; Popovych, Oleksandr V.
Predicting response speed and age from task-evoked effective connectivity
Network Neuroscience 9, 591-614 (2025), 10.1162/netn_a_00447

Last Modified: 04.10.2025