Institut für Bio- und Geowissenschaften (IBG)

Biotechnologie (IBG-1)

Publikationen 2025

Master Thesis Andree, A.FZJ*
Microfluidic Platform for the Study of Stable Co-Cultures: Phototrophic and Heterotrophic Microorganisms in Sucrose-Driven Carbon Exchange
95 p. (2025)2025 = Masterarbeit, Universität Bonn, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Balusamy, K. ; Narančić, T. ; Bruch, M. ; Casey, W. ; Rich, M. ; Lynch, C. ; Hughes, G. ; Blank, L. M. ; Wierckx, N.FZJ* ; O'Connor, K. (Corresponding author)
Continuous cultivation of defined mixed bacterial cultures for upcycling polyurethane and polyethylene terephthalate monomers to polyhydroxyalkanoates
Polymer degradation and stability 242, 111605 - (2025) [10.1016/j.polymdegradstab.2025.111605]2025 Files BibTeX | EndNote: XML, Text | RIS

Contribution to a book Baumschlager, A. ; Knapp, F. ; Hogenkamp, F. ; Paik, S.-H. ; Jaeger, K.-E.FZJ* ; Pietruszka, J. (Corresponding author)FZJ* ; Drepper, T. (Corresponding author)FZJ*
Optogenetics Methods and Protocols
2025[Ebook] Optogenetics : Methods and Protocols / Baumschlager, Armin 1st ed. 2025, New York, NY : Springer US, 2025, New York, NY : Springer US : 1st ed. 2025, 1 Online-Ressource(XII, 256 p. 63 illus., 57 illus. in color. (2025) [10.1007/978-1-0716-4047-0]2025 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Beck, J. (Corresponding author) ; Scheich, D. ; von Lieres, E.FZJ* ; Hahn, R.
Measuring adsorption equilibria: The determination of the maximum binding capacity depends strongly on the method of resin preparation
Journal of chromatography 1762, 466421 - (2025) [10.1016/j.chroma.2025.466421]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Bergmann, M.-L.FZJ*
The influence of Bacteriophages on Plant and Animal Microbiomes
147 pp. (2025)2025 = Masterarbeit, HHU Düsseldorf, 2025 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Binti Mohd Nasir, A. H. (Corresponding author)FZJ*
Optimisation of (R)-3-hydroxy-phenylacetylcarbinol synthesis using pyruvate decarboxylase from the Acetobacter pasteuranius (ApPDC) variants in micro aqueous reaction system (MARS) and in aqueous reaction system
73 p. (2025)2025 = Bachelorarbeit, Hochschule Emden-Leer, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Bott, M. (Corresponding author)FZJ* ; Wendisch, V. F.
Corynebacterium glutamicum: vom Umami-Geschmack zur Bioökonomie
Biospektrum 31(1), 14 - 17 (2025) [10.1007/s12268-025-2366-3]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Böß, M. T. (Corresponding author)FZJ*
Implementation and Characterization of High-Throughput Bioprocess Automation Analysiswith a Growth Profiler
128 p. (2025)2025 = Masterarbeit, TU München, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Cui, J. ; Fassl, M. ; Vasanthakumaran, V. ; Dierig, M. M. ; Hölzl, G. ; Karmainski, T. ; Tiso, T. ; Kubicki, S. ; Thies, S.FZJ* ; Blank, L. M. ; Jaeger, K.-E.FZJ* ; Dörmann, P. (Corresponding author)
Biosurfactant biosynthesis by Alcanivorax borkumensis and its role in oil biodegradation
Nature chemical biology 21(10), 1631 - 1641 (2025) [10.1038/s41589-025-01908-1]2025 Files BibTeX | EndNote: XML, Text | RIS

Journal Article de Witt, J. ; Luthe, T.FZJ* ; Wiechert, J.FZJ* ; Jensen, K. ; Polen, T.FZJ* ; Wirtz, A.FZJ* ; Thies, S.FZJ* ; Frunzke, J.FZJ* ; Wynands, B.FZJ* ; Wierckx, N.FZJ*
Upcycling of polyamides through chemical hydrolysis and engineered Pseudomonas putida
Nature microbiology 10(3), 667 - 680 (2025) [10.1038/s41564-025-01929-5]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Dorenkamp, S.
Klonierungen und Untersuchungen zur funktionalen Expression des L-Arabinose-Transporters AraE aus E. coli sowie zur Erhöhung der Aktivität der membrangebundenen Glukose-Dehydrogenase im Essigsäurebakterium Gluconobacter oxydans für die Bioprozessentwicklung
67 pp. (2025)2025 = Bachelorarbeit, HS Hamm-Lippstadt, 2025 BibTeX | EndNote: XML, Text | RIS

Patent Erdrich, S.FZJ* ; Arsova, B.FZJ* ; Frunzke, J.FZJ* ; Schurr, U.FZJ*
Matrix-vermittelte Beschichtung von Zielorganismen mit Bioeffektoren
Fulltext BibTeX | EndNote: XML, Text | RIS

Journal Article Eremina, A. ; Schwall, C. ; Saez, T. ; Witting, L.FZJ* ; Kohlheyer, D.FZJ* ; Martins, B. M. C. ; Thomas, P. ; Locke, J. C. W. (Corresponding author)
Environmental and molecular noise buffering by the cyanobacterial clock in individual cells
Nature Communications 16(1), 3566 (2025) [10.1038/s41467-025-58169-8]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Book/Dissertation / PhD Thesis Ernst, P. (Corresponding author)FZJ*
Exploring the process window for production of itaconic, 2 hydroxyparaconic, and itatartaric acid with engineered Ustilago strains
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich Reihe Schlüsseltechnologien / Key Technologies 293, x, 145 (2025) [10.34734/FZJ-2024-06042]2025 = Dissertation, Düsseldorf, 2024 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Journal Article Frandsen, J. ; Breuer, J. M.FZJ* ; Schmölder, J.FZJ* ; Abildskov, J. ; Huusom, J. K. ; Gernaey, K. V. ; von Lieres, E. (Corresponding author)FZJ*
High-Performance C++ and Julia solvers in CADET for weakly and strongly coupled continuous chromatography problems
Computers & chemical engineering 202, 109295 - (2025) [10.1016/j.compchemeng.2025.109295]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Frandsen, J. ; Breuer, J. M.FZJ* ; Schmölder, J.FZJ* ; Huusom, J. K. ; Gernaey, K. V. ; Abildskov, J. ; von Lieres, E. (Corresponding author)FZJ*
CADET-Julia: Efficient and versatile, open-source simulator for batch chromatography in Julia
Computers & chemical engineering 192, 108913 - (2025) [10.1016/j.compchemeng.2024.108913]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Friederich, N. (Corresponding author) ; Yamachui Sitcheu, A. J. ; Nassal, A. ; Yildiz, E.FZJ* ; Pesch, M.FZJ* ; Beichter, M. ; Scholtes, L.FZJ* ; Akbaba, B. ; Lautenschlager, T. ; Neumann, O. ; Kohlheyer, D.FZJ* ; Scharr, H.FZJ* ; Seiffarth, J.FZJ* ; Nöh, K.FZJ* ; Mikut, R.
EAP4EMSIG – enhancing event-driven microscopy for microfluidic single-cell analysis
Automatisierungstechnik 73(10), 808 - 823 (2025) [10.1515/auto-2025-0018]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Frunzke, J.FZJ* ; Wiechert, J.FZJ* ; Badia Roigé, B.FZJ* ; Dohmen-Olma, D.FZJ* ; Hindra ; Zhang, X. ; Stella, R. G. ; Elliot, M. A.
CRISPR/dCas-mediated counter-silencing - Reprogramming dCas proteins into antagonists of xenogeneic silencers
mBio 16(7), 1-23 (2025) [10.1128/mbio.00382-25]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Gardiner, S. ; Dollinger, P. ; Kovacic, F. ; Pietruszka, J.FZJ* ; Ess, D. H. ; Jaeger, K.-E.FZJ* ; Schröder, G.FZJ* ; Della Corte, D. (Corresponding author)
Resolution of physics and deep learning-based protein engineering filters: A case study with a lipase for industrial substrate hydrolysis
PLOS ONE 20(9), e0332409 - (2025) [10.1371/journal.pone.0332409]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Gentz, M.
Chassis engineering of Pseudomonas taiwanensis for enhanced production of hydrophobic aromatics
53 pp. (2025)2025 = Masterarbeit, TH Mannheim, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Gerhards, T. ; Harrar, T. E.FZJ* ; Klein, A. S. ; von Lieres, E.FZJ* ; Paul, C. E. ; Lavandera, I. ; Gotor-Fernández, V. ; Pietruszka, J.FZJ* ; Pohl, M.FZJ* ; Gohlke, H. (Corresponding author)FZJ* ; Rother, D. (Corresponding author)FZJ*
Influence of ionic liquids on enzymatic asymmetric carboligations
Computational and structural biotechnology journal 27, 4212 - 4225 (2025) [10.1016/j.csbj.2025.09.029]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Guckelsberger, K. (Corresponding author)FZJ*
Optimization of media components for peroxidase production in Komagataella Phaffii using microscale cultivation
87 p. (2025)2025 = Bachelorarbeit, Rhein-Waal Hochschule Kleve, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Haase, M. ; Weiergräber, O. H. (Corresponding author)FZJ* ; Pietruszka, J. (Corresponding author)FZJ*
Re‐engineering a transferase scaffold for indole C3 methylation in diketopiperazines
Protein science 34(9), e70254 (2025) [10.1002/pro.70254]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Haase, M.FZJ* ; Weiergräber, O. H.FZJ* ; David, B.FZJ* ; Pfirmann, E. L.FZJ* ; Paschold, B.FZJ* ; Gohlke, H. (Corresponding author)FZJ* ; Pietruszka, J. (Corresponding author)
Characterization of a C-methyltransferase from Streptomyces griseoviridis – crystal structure, mechanism, and substrate scope
Chemical science 16(10), 4519 - 4527 (2025) [10.1039/D4SC07300B]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Halle, L.FZJ* ; Höppner, D.FZJ* ; Doser, M.FZJ* ; Brüsseler, C. ; Gätgens, J.FZJ* ; Conen, N. ; Jupke, A.FZJ* ; Marienhagen, J.FZJ* ; Noack, S. (Corresponding author)FZJ*
From molasses to purified α-ketoglutarate with engineered Corynebacterium glutamicum
Bioresource technology 416, 131803 - (2025) [10.1016/j.biortech.2024.131803]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Contribution to a conference proceedings/Journal Article Heinzel, C. S. ; Jadebeck, J. F.FZJ* ; Zelle, E.FZJ* ; Seiffarth, J.FZJ* ; Nöh, K. (Corresponding author)FZJ*
Combining Knowledge About Metabolic Networks and Single-Cell Data with Maximum Entropy
2025MaxEnt 2024, Meeting location, Physical sciences forum 12(1), 3 (2025) [10.3390/psf2025012003]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Contribution to a book Herwig, C. (Editor) ; Pörtner, R. (Editor) ; Möller, J. (Editor) ; Scheper, T. ; Beutel, S. ; McGuinness, N. ; Heiden, S. ; Oldiges, M.FZJ* ; Lammers, F. ; Reardon, K. F.
Digitalisierung und Bioprozessierung: Aussichten und Herausforderungen
2025Digitale Zwillinge / Herwig, Christoph (Editor) ; Cham : Springer Nature Switzerland, 2025, Chapter 3 ; ISBN: 978-3-031-75697-9 ; doi:10.1007/978-3-031-75698-6 Cham : Springer Nature Switzerland 63-76 (2025) [10.1007/978-3-031-75698-6_3]2025 BibTeX | EndNote: XML, Text | RIS

Master Thesis Hoffzimmer, A.FZJ*
Bioprocess optimization of heterologous procuction of antimicrobial peptide Lysostaphin with Corynebacterium glutamicum
91 p. (2025)2025 = Masterarbeit, Universität Bonn, 2025 BibTeX | EndNote: XML, Text | RIS

Master Thesis Hülsmann, F. (Corresponding author)FZJ*
Integration of biological degradation processes into a multi-component adsorption model for simulating granular activated carbon filters in wastewater treatment
33 p. (2025)2025 = Masterarbeit, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Master Thesis Iyer, H.
Studies on the functional expression of the Larabinose transporter AraE from E. coli in the acetic acid bacterium Gluconobacter oxydans for establishing light-controlled gene expression using the L-arabinose-inducible AraC-ParaBAD system from E. coli
67 pp. (2025)2025 = Masterarbeit, HS Ansbach, 2025 BibTeX | EndNote: XML, Text | RIS

Contribution to a conference proceedings/Journal Article Jadebeck, J. F.FZJ* ; Wiechert, W.FZJ* ; Nöh, K. (Corresponding author)FZJ*
Trans-Dimensional Diffusive Nested Sampling for Metabolic Network Inference
2025MaxEnt 2024, Meeting location, Physical sciences forum 12, 5 (2025) [10.3390/psf2025012005]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Jäpel, R. (Corresponding author)FZJ* ; Knödler, M. ; von Lieres, E.FZJ* ; Buyel, J. F. (Corresponding author)
Hydrophobic interaction chromatography (HIC) isotherm incorporating salt-dependent water activity enhances model-based analysis of protein elution profiles
Journal of chromatography 1756, 466095 - (2025) [10.1016/j.chroma.2025.466095]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Jos, H. A.FZJ*
Matrix Hit- and Run for Sampling Convex Polytopes and its GPU implementation
79 p. (2025)2025 = Masterarbeit, Friedrich-Alexander-Universität Erlangen-Nürnberg, 2025 BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Kasahara, K.FZJ*
Structuring Spatiotemporal Oxygen Environments for Microbial Single-Cell Analysis in Microfluidics
155 p. (2025)2025 = Dissertation, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Kasahara, K.FZJ* ; Seiffarth, J. ; Stute, B.FZJ* ; von Lieres, E.FZJ* ; Drepper, T.FZJ* ; Nöh, K.FZJ* ; Kohlheyer, D. (Corresponding author)FZJ*
Unveiling microbial single-cell growth dynamics under rapid periodic oxygen oscillations
Lab on a chip 25(9), 2234 - 2246 (2025) [10.1039/D5LC00065C]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Kasahara, K.FZJ* ; Kohlheyer, D. (Corresponding author)FZJ*
Creating Rapid Oxygen Oscillations in Microbial Single-cell Growth Analysis using a Microfluidic Double-layer Device
JoVE science education 0(221), 68697 (2025) [10.3791/68697]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Kayserling, A. (Corresponding author)FZJ*
Analyzing optochemical expression control systems in Gluconobacter oxydans on a single-cell level
101 p. (2025)2025 = Masterarbeit, TU Berlin, 2025 BibTeX | EndNote: XML, Text | RIS

Master Thesis Keilen, K.FZJ*
Development of a Next-Generation Screening Method for Microplastic-Binding Adhesion Peptides using LC-MS/MS
75 p. (2025)2025 = Masterarbeit, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Master Thesis Kern, B.FZJ*
Automatisierte Konstruktion einer Sekretionsstammbibliothek für die Produktion von Adhäsionsvermittlern zur Mikroplastikdetektion
148 p. (2025)2025 = Masterarbeit, TU Berlin, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Kohlheyer, D.FZJ*
Creating Rapid Oxygen Oscillations in Microbial Single-cell Growth Analysis using Microfluidic Double-layer Device
JoVE / Video journal 0, 0-0 (2025)2025 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Kösters, D.FZJ* ; Marienhagen, J. (Corresponding author)FZJ*
Molecular methods for high-throughput, multiplexed, and automated genome editing in prokaryotes and eukaryotes
Current opinion in biotechnology 96, 103381 - (2025) [10.1016/j.copbio.2025.103381]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Krishnamoorthy, M.FZJ*
Studies on the functional expression of the L-rhamnose transporter RhaT from E. coli in the acetic acid bacterium Gluconobacter oxydans for establishing light-controlled gene expression using the L-rhamnose inducible RhaS-PrhaBAD system from E. coli
85 pp. (2025)2025 = Masterarbeit, HS Ansbach, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Krüger, A.FZJ* ; Weber, U.FZJ* ; Frunzke, J. (Corresponding author)FZJ*
Genome‐Wide Analysis of DtxR and HrrA Regulons Reveals Novel Targets and a High Level of Interconnectivity Between Iron and Heme Regulatory Networks in Corynebacterium glutamicum
Molecular microbiology 124(2), 115-130 (2025) [10.1111/mmi.15376]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Lanzrath, H.FZJ*
Modeling and Analysis of Tracer Transport Dynamics in Plants
178 p. (2025)2025 = Dissertation, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Lanzrath, H.FZJ* ; von Lieres, E.FZJ* ; Metzner, R.FZJ* ; Huber, G. (Corresponding author)FZJ*
Analyzing time activity curves from spatio-temporal tracer data to determine tracer transport velocity in plants
Mathematical biosciences 383, 109430 - (2025) [10.1016/j.mbs.2025.109430]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Laufens, M.FZJ*
MoClo-based CRISPR/Cas12a workflows for standardized genomic integrations in Corynebacterium glutamicum
77 pp. (2025)2025 = Masterarbeit, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Book/Dissertation / PhD Thesis Lechtenberg, T.FZJ*
Tolerance engineering of Pseudomonas for the efficient conversion and production of aldehydes
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich Reihe Schlüsseltechnologien / Key Technologies 292, XVI, 185 (2025) [10.34734/FZJ-2024-07180]2025 = Dissertation, Düsseldorf, 2024 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Lehnert, A.FZJ*
Enforced alteration of sugar uptake and metabolism in Corynebacterium glutamicum and application for the production of the natural low-calorie sweetener D-allulose
204 pp. (2025)2025 = Dissertation, HHU Düsseldorf, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Leweke, S.FZJ* ; Breuer, J.FZJ* ; Schmölder, J.FZJ* ; Jäpel, R.FZJ* ; Lanzrath, H.FZJ* ; Rao, J.FZJ* ; Hassan, J.FZJ* ; Zhang, W. ; Berger, A.FZJ* ; Heymann, W. ; von Lieres, E.FZJ*
CADET-Core 5.0: High-Performance Solver for Advanced Biotechnology Process Modeling
The journal of open source software 10(111), 7881 - (2025) [10.21105/joss.07881]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Liu, X. ; Park, H. ; Ackermann, Y.FZJ* ; Avérous, L. ; Ballerstedt, H. ; Besenmatter, W. ; Blázquez, B. ; Bornscheuer, U. T. ; Branson, Y. ; Casey, W. ; de Lorenzo, V. ; Dong, W. ; Floehr, T. ; Godoy, M. S. ; Ji, Y. ; Jupke, A.FZJ* ; Klankermayer, J. ; León, D. S. ; Liu, L. ; Liu, X. ; Liu, Y. ; Manoli, M. T. ; Martínez-García, E. ; Narancic, T. ; Nogales, J. ; O'Connor, K. ; Osterthun, O. ; Perrin, R. ; Prieto, M. A. ; Pollet, E. ; Sarbu, A. ; Schwaneberg, U. ; Su, H. ; Tang, Z. ; Tiso, T. ; Wang, Z. ; Wei, R. ; Welsing, G. ; Wierckx, N.FZJ* ; Wolter, B. ; Xiao, G. ; Xing, J. ; Zhao, Y.FZJ* ; Zhou, J. ; Tan, T. ; Blank, L. M. ; Jiang, M. ; Chen, G.-Q.
Exploring biotechnology for plastic recycling, degradation and upcycling for a sustainable future
Biotechnology advances 81, 108544 - (2025) [10.1016/j.biotechadv.2025.108544]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Marienhagen, J. (Corresponding author)FZJ*
Engineering of Corynebacterium glutamicum for the synthesis of aromatic compounds
Applied microbiology and biotechnology 109(1), 132 (2025) [10.1007/s00253-025-13520-3]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Mechrouki, S.FZJ*
Regulation of lysis-lysogeny decision in Corynebacterium glutamicum ATCC 13032 harboring the CyranoPS prophage
95 pp. (2025)2025 = Masterarbeit, HHU Düsseldorf, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Meln, I. (Corresponding author) ; Van Molle, W. ; Vélez, M. P. ; Abrahamsen, G. ; Brusselmans, K. ; Calvosa, E. ; Cardillo, A. G. ; Clénet, D. ; Forestieri, C. ; Gernaey, K. V. ; Hoefnagel, M. ; Jorgensen, J. B. ; Lebrun, P. ; Natalis, L. ; Nilsson, B. ; Öppling, V. ; Pollinger, J. C. ; Rayat, A. C. M. E. ; Reem, D. ; Rubbrecht, M. ; Schmölder, J.FZJ* ; Schofield, T. ; Smith, D. ; Timmins, S. ; von Lieres, E.FZJ* ; Welin, M. ; Bracewell, D. G.
Advancing regulatory dialogue: In silico models for improved vaccine biomanufacturing - an expert meeting report
Vaccine 56, 127170 - (2025) [10.1016/j.vaccine.2025.127170]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Myllek, S. ; Lencer, P.FZJ* ; Klischan, M. ; Henssen, B.FZJ* ; Neudecker, P.FZJ* ; Breugst, M. (Corresponding author) ; Pietruszka, J. (Corresponding author)FZJ*
Asymmetric synthesis of C–N axially chiral carbazoles via axial-to-axial chirality transfer
Organic & Biomolecular Chemistry 23(20), 4888-4892 (2025)2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Myllek, S. ; Lencer, P.FZJ* ; Klischan, M. K. T. ; Henssen, B.FZJ* ; Neudecker, P.FZJ* ; Breugst, M. ; Pietruszka, J. (Corresponding author)FZJ*
Asymmetric synthesis of C–N axially chiral carbazoles via axial-to-axial chirality transfer
Organic & biomolecular chemistry 23(20), 4888 - 4892 (2025) [10.1039/D5OB00587F]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Nicolas, M.FZJ* ; Küsters-Spöring, J.-D. ; Aufderheide, C. ; Traving, H. ; Kipp, C. ; Pfennig, V. ; Bolm, C. ; Siegert, P. ; Rother, D. (Corresponding author)FZJ*
Enzymatic asymmetric synthesis of all stereoisomers of aliphatic, vicinal diols in conventional and non‐conventional media
Advanced synthesis & catalysis 367(8), e202401143 (2025) [10.1002/adsc.202401143]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Nicolas, M.FZJ* ; Gaelings, N. ; Wiesenthal, J. ; von Westarp, W. G. ; Pehlivanlar, B. ; Pischinger, S. ; Jupke, A.FZJ* ; Klankermayer, J. ; Rother, D.FZJ*
Combination of Bio‐ and Organometallic Catalysis for the Synthesis of Dioxolanes in Organic Solvents
ChemCatChem 17(6), e202401836 (2025) [10.1002/cctc.202401836]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Nicolas, M.FZJ*
Integration of adaptive enzymatic one- and multistep synthesis in the sustainable production of bio-fuels and chiral fine chemicals
207 pp. (2025)2025 = Dissertation, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Master Thesis Nikolskyy, O.FZJ*
Reversible and Non-Reversible Parallel Tempering Methods for Efficient Polytope Sampling
52 p. (2025)2025 = Masterarbeit, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Nohr, J. (Corresponding author)FZJ*
Data analysis of circadian clock mutants cultivated in a microfluidic system
56 p. (2025)2025 = Bachelorarbeit, Heinrich Heine Universität Düsseldorf, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Op de Hipt, L.FZJ* ; Ackermann, Y. ; de Jong, H.FZJ* ; Polen, T.FZJ* ; Wynands, B.FZJ* ; Wierckx, N. (Corresponding author)FZJ*
Engineering of 1,4‐Butanediol and Adipic Acid Metabolism in Pseudomonas taiwanensis for Upcycling to Aromatic Compounds
Microbial biotechnology 18(8), e70205 (2025) [10.1111/1751-7915.70205]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Orimaco, R.Extern* ; Donnelly, P. ; Sexton, S. ; McLoughlin, A. ; Kelly, S. ; O'Connor, K. E. ; Wierckx, N.FZJ* ; Narančić, T. (Corresponding author)
Characterisation and Harnessing of 5‐Hydroxymethylfurfural Metabolism in Pseudomonas umsongensis GO16 for the Production of 2,5‐Furandicarboxylic Acid
Microbial biotechnology 18(5), e70159 (2025) [10.1111/1751-7915.70159]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Contribution to a conference proceedings/Contribution to a book Paul, R. D. (Corresponding author)FZJ* ; Seiffarth, J.FZJ* ; Rügamer, D. ; Scharr, H.FZJ* ; Nöh, K.FZJ*
How To Make Your Cell Tracker Say "I dunno!"
2025Proceedings of the IEEE/CVF International Conference on Computer Vision (ICCV)
International Conference on Computer Vision, ICCV 2025, HonoluluHonolulu, USA, 19 Oct 2025 - 23 Oct 20252025-10-192025-10-23 6914-6923 (2025)2025 Fulltext BibTeX | EndNote: XML, Text | RIS

Master Thesis Poschen, R. J.
Optimizing the biotechnological production process for erythritol with Ustilago yeast
110 pp. (2025)2025 = Masterarbeit, FH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Book/Dissertation / PhD Thesis Rackow, B.FZJ*
Elucidation of anti-viral strategies in Streptomyces
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich Reihe Schlüsseltechnologien / Key Technologies 298, xii, 148 (2025) [10.34734/FZJ-2025-02793]2025 = Dissertation, Düsseldorf, 2025 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Journal Article Rao, J. S. ; Leweke, S.FZJ* ; Breuer, J. M.FZJ* ; Menzel, S. ; Behr, M. ; von Lieres, E. (Corresponding author)FZJ*
Two-dimensional general rate model with particle size distribution in CADET calibrated with high-definition CFD simulated intra-column data
Separation and purification technology 379, 134409 - (2025) [10.1016/j.seppur.2025.134409]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Rao, J. S.FZJ*
Advances and Applications in High-Definition Simulation of Packed Bed Liquid Chromatography
124 p. (2025)2025 = Dissertation, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Master Thesis Recker, V. (Corresponding author)FZJ*
Application of automated methods to optimise the secretion to two bifunctional proteins in C. glutamicum using different signal peptides
104 p. (2025)2025 = Masterarbeit, FH Jülich, Campus Jülich, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Reiter, A. ; Wesseling, L. ; Wiechert, W.FZJ* ; Oldiges, M. (Corresponding author)FZJ*
Rapid exometabolome footprinting combined with multivariate statistics: A powerful tool for bioprocess optimization
Engineering in life sciences 25(2), 2300222 (2025) [10.1002/elsc.202300222]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Rohr, K.FZJ* ; Geinitz, B.FZJ* ; Seiffarth, J.FZJ* ; Anbarani, A. ; Bernauer, S. ; Moch, M.FZJ* ; Tenhaef, J.FZJ* ; Wiechert, W.FZJ* ; Nöh, K.FZJ* ; Oldiges, M. (Corresponding author)FZJ*
Insights into the morphology-productivity relationship of filamentous fungi through small-scale cultivation and automated microscopy of Thermothelomyces thermophilus
Biotechnology progress 41(3), e3528 (2025) [10.1002/btpr.3528]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Rönitz, J.FZJ* ; Herrmann, F.FZJ* ; Wynands, B.FZJ* ; Polen, T.FZJ* ; Wierckx, N. (Corresponding author)FZJ*
SIGHT—A System for Solvent‐Tight Incubation and Growth Monitoring in High Throughput
Engineering in life sciences 25(2), e202400037 (2025) [10.1002/elsc.202400037]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Book/Dissertation / PhD Thesis Rönitz, J.FZJ*
Metabolic engineering of Pseudomonas taiwanensis for the improved production of styrene
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich Reihe Schlüsseltechnologien / Key Technologies 297, XII, 147 (2025) [10.34734/FZJ-2025-03157]2025 = Dissertation, Düsseldorf, 2025 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Rother, E.FZJ*
The Influence of deleted prophage regions in Pseudomonas production strains on phage susceptibility
48 pp. (2025)2025 = Bachelorarbeit, HHU Düsseldorf, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Rudin, L. ; Kneubühler, J. ; Dubey, B. N. ; Ahmad, S.FZJ* ; Bornstein, M. M. ; Shyp, V. (Corresponding author)
Inhibitory effect of plant flavonoid cyanidin on oral microbial biofilm
Microbiology spectrum 13(6), e02848-24 (2025) [10.1128/spectrum.02848-24]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Rudolph, M.
Leveraging mechanistic modeling of the Shikimate pathway in Corynebacterium glutamicum to support rational strain construction
69 pp. (2025)2025 = Masterarbeit, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Ruzaeva, K.FZJ*
Geometry-aware Image Analysis for Microfluidic Live-cell Experimentation
135 p. (2025)2025 = Dissertation, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Schatton, M.FZJ* ; Haase, M.FZJ* ; Tenhaef, J.FZJ* ; Gronkowsky, C.FZJ* ; Noack, S.FZJ* ; Pietruszka, J. (Corresponding author)FZJ*
Chemoenzymatic Total Synthesis of Lansai B
Chemistry - a European journal 31(26), e202500740 (2025) [10.1002/chem.202500740]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Schmidt, A.FZJ*
Metabolic engineering of Pseudomonas taiwanensis for sustainable bio-production of 2-phenylethyl acetate
75 pp. (2025)2025 = Masterarbeit, Heinrich-Heine University Düsseldorf, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Schwanemann, T. ; Krink, N. ; Nikel, P. I. ; Wynands, B.FZJ* ; Wierckx, N. (Corresponding author)FZJ*
Engineered Passive Glucose Uptake in Pseudomonas taiwanensis VLB120 Increases Resource Efficiency for Bioproduction
Microbial biotechnology 18(1), e70095 (2025) [10.1111/1751-7915.70095]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Schwertfeger, A.FZJ*
Optimal Experimental Design in Isotopically Nonstationary Metabolic Flux Analysis
88 p. (2025)2025 = Masterarbeit, Karlsruher Institute of Technology - KIT, 2 BibTeX | EndNote: XML, Text | RIS

Journal Article Seiffarth, J.FZJ* ; Nöh, K. (Corresponding author)FZJ*
PyUAT: An open-source Python framework for uncertainty-aware, efficient, and scalable model-driven cell tracking
PLOS ONE 20(12), e0337110 - (2025) [10.1371/journal.pone.0337110]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Seiffarth, J.FZJ*
Quantitative single-cell analysis using deep learning based smart live-cell microscopy
195 p. (2025)2025 = Dissertation, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Contribution to a conference proceedings/Contribution to a book Seiffarth, J.FZJ* ; Blöbaum, L. ; Paul, R. D.FZJ* ; Friederich, N. ; Sitcheu, A. J. Y. ; Mikut, R. ; Scharr, H.FZJ* ; Grünberger, A. ; Nöh, K.FZJ*
Tracking One-in-a-Million: Large-Scale Benchmark for Microbial Single-Cell Tracking with Experiment-Aware Robustness Metrics
2025Computer Vision – ECCV 2024 Workshops / Del Bue, Alessio (Editor) ; Cham : Springer Nature Switzerland, 2025, Chapter 20 ; ISSN: 0302-9743=1611-3349 ; ISBN: 978-3-031-91720-2=978-3-031-91721-9 ; doi:10.1007/978-3-031-91721-9
ECCV 2024, MilanoMilano, Italy, 29 Sep 2024 - 4 Oct 20242024-09-292024-10-04 Cham : Springer Nature Switzerland, Lecture Notes in Computer Science 15638, 318 - 334 (2025) [10.1007/978-3-031-91721-9_20]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Siedentop, R. (Corresponding author) ; Siska, M. (Corresponding author)FZJ* ; Hermes, J. ; Lütz, S. ; von Lieres, E.FZJ* ; Rosenthal, K.
Avoiding Replicates in Biocatalysis Experiments: Machine Learning for Enzyme Cascade Optimization
ChemCatChem 17(1), e202400777 (2025) [10.1002/cctc.202400777]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Stadler, N. ; Pietruszka, J. (Corresponding author)FZJ*
Jahresrückblick Organische Chemie: Naturstoff(total)synthese
Nachr. Chem. Tech. Lab. 73(3), 61-63 (2025)2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Stadler, N.FZJ* ; Henssen, B.FZJ* ; Pietruszka, J.FZJ* ; Classen, T. (Corresponding author)FZJ*
A Sustainable Method for Potato Side Stream Valorisation to Obtain Steroidal Glycoalkaloids within a Bioeconomy Approach
Green chemistry 27(45), 14683-14694 (2025) [10.1039/D5GC03072B]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Stratmann, A.FZJ* ; Beyß, M.FZJ* ; Jadebeck, J. F.FZJ* ; Wiechert, W.FZJ* ; Nöh, K. (Corresponding author)FZJ*
13CFLUX — Third-generation high-performance engine for isotopically (non)stationary 13C metabolic flux analysis
Bioinformatics 41(12), btaf630 (2025) [10.1093/bioinformatics/btaf630]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Sumaila, L.FZJ*
Exploring the catalyttic potential of the carboxylic acid reductase from Neurospora crassa for the enzymtic reduction of formic acid to formaldehyde
82 p. (2025)2025 = Masterarbeit, FH Aachen, Campus Jülich, 2025 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Thiele, E. E. (Corresponding author)RWTH*
Einfluss der Eisenverfügbarkeit auf die Infektiosität von Bakteriophagen bei E. coli
57 pp. (2025)2025 = Bachelorarbeit, HHU Düsseldorf, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Trávníková, V. (Corresponding author) ; von Lieres, E.FZJ* ; Behr, M.
Quantifying data needs in surrogate modeling for flow fields in two-dimensional stirred tanks with physics-informed neural networks
Physics of fluids 37(11), 117112 (2025) [10.1063/5.0291054]2025 Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Vanselow, J.FZJ*
Comparative cultivation of Cyanidioschyzon merolae and Galdieria sulphuraria, isolation and characterisation of phycobiliproteins, carotenoids and fatty acids for the evaluation of an integrated biorefinery concept
87 pp. (2025)2025 = Masterarbeit, FH Jülich, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Weber, T. M. ; Pietruszka, J. (Corresponding author)FZJ*
Functionalized in Triplicate: A Ring‐By‐Ring Approach to Tailored Prodiginine Derivatives for Site‐Specific Conjugation Through Click Chemistry
Chemistry - a European journal 31(43), e202502066 (2025) [10.1002/chem.202502066]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Wiechert, W. (Corresponding author)FZJ* ; Helleckes, L. M. ; Nöh, K.FZJ*
Building trust in automated experimentation: uncertainty quantification in the era of high-throughput biolabs
Current opinion in biotechnology 96, 103382 - (2025) [10.1016/j.copbio.2025.103382]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Witting, L.FZJ* ; Seiffarth, J. ; Stute, B.FZJ* ; Schulze, T. ; Hofer, J. M. ; Nöh, K.FZJ* ; Eisenhut, M. ; Weber, A. P. M. ; von Lieres, E.FZJ* ; Kohlheyer, D. (Corresponding author)FZJ*
A microfluidic system for the cultivation of cyanobacteria with precise light intensity and CO 2 control: enabling growth data acquisition at single-cell resolution
Lab on a chip 25(3), 319-329 (2025) [10.1039/D4LC00567H]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Wolf, L.FZJ*
Automation of a CRISPR/Cas12a-mediated genome editing system in Corynebacterium glutamicum
96 p. (2025)2025 = Masterarbeit, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Master Thesis Xu, X.FZJ*
Massivelyparallel high-definition simulation of packed-bed chromatography in laterally unconfined compartments
62 p. (2025)2025 = Masterarbeit, RWTH Aachen, 2025 BibTeX | EndNote: XML, Text | RIS

Journal Article Zhang, W. ; Przybycien, T. ; Breuer, J. M.FZJ* ; von Lieres, E. (Corresponding author)FZJ*
Solving crystallization/precipitation population balance models in CADET, part II: Size-based Smoluchowski coagulation and fragmentation equations in batch and continuous modes
Computers & chemical engineering 192, 108860 - (2025) [10.1016/j.compchemeng.2024.108860]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Zhao, Q. ; Zhang, R. ; Döbber, J. ; Gulder, T. (Corresponding author)
Chemoenzymatic C,C-Bond Forming Cascades by Cryptic Vanadium Haloperoxidase Catalyzed Bromination
Organic letters 27(1), 159 - 164 (2025) [10.1021/acs.orglett.4c04108]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Zuchowski, R. ; Schito, S. ; Mack, C. ; Wirtz, A.FZJ* ; Bott, M.FZJ* ; Polen, T.FZJ* ; Noack, S.FZJ* ; Baumgart, M. (Corresponding author)FZJ*
ALE reveals a surprising link between [Fe-S] cluster formation, tryptophan biosynthesis and the potential regulatory protein TrpP in Corynebacterium glutamicum
BMC microbiology 25(1), 214 (2025) [10.1186/s12866-025-03939-z]2025 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Letzte Änderung: 18.02.2025