Publications

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Benefits and limits of biological nitrification inhibitors for plant nitrogen uptake and the environment
Scientific reports 14, 15027 () [10.1038/s41598-024-65247-2] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Modeling cassava root system architecture and the underlying dynamics in shoot–root carbon allocation during the early storage root bulking stage
Plant and soil -, - () [10.1007/s11104-024-06771-y]   Download fulltextFulltext BibTeX | EndNote: XML, Text | RIS

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More N fertilizer, more maize, and less alfalfa: maize benefits from its higher N uptake per unit root length
Frontiers in Functional Plant Ecology 15, 1338521 () [10.3389/fpls.2024.1338521] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Pitfalls and potential of high-throughput plant phenotyping platforms
Frontiers in plant science 14, 1233794 () [10.3389/fpls.2023.1233794] special issue: "Plant Phenotyping for a Sustainable Future" OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Collaborative benchmarking of functional-structural root architecture models: Quantitative comparison of simulated root water uptake
In silico plants 5(1), diad005 () [10.1093/insilicoplants/diad005] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Molecular mechanisms of Pseudomonas assisted plant nitrogen uptake - opportunities for modern agriculture
Molecular plant microbe interactions 36(9), 536-548 () [10.1094/MPMI-10-22-0223-CR] OpenAccess  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Plant root plasticity during drought and recovery: What do we know and where to go?
Frontiers in plant science 14, 1084355 () [10.3389/fpls.2023.1084355] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Deep‐water uptake under drought improved due to locally increased root conductivity in maize, but not in faba bean
Plant, cell & environment 46(7), 2046-2060 () [10.1111/pce.14587] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Nutrient deficiency effects on root architecture and root-to-shoot ratio in arable crops
Frontiers in plant science 13, 1067498 () [10.3389/fpls.2022.1067498] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Shallow roots of different crops have greater water uptake rates per unit length than deep roots in well-watered soil
Plant and soil 481(1-2), 475–493 () [10.1007/s11104-022-05650-8] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Stomatal conductance tracks soil-to-leaf hydraulic conductance in faba bean and maize during soil drying
Plant physiology 190(4), 2279 - 2294 () [10.1093/plphys/kiac422] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Plant Growth Promotion and Heat Stress Amelioration in Arabidopsis Inoculated with Paraburkholderia phytofirmans PsJN Rhizobacteria Quantified with the GrowScreen-Agar II Phenotyping Platform
Plants 11(21), 2927 - () [10.3390/plants11212927] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Assessing the Storage Root Development of Cassava with a New Analysis Tool
Plant phenomics 2022, 1 - 15 () [10.34133/2022/9767820] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Rhizosphere models: their concepts and application to plant-soil ecosystems
Plant and soil 474(1-2), 17 - 55 () [10.1007/s11104-021-05201-7] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Isolation of Novel Xanthomonas Phages Infecting the Plant Pathogens X. translucens and X. campestris
Viruses 14(7), 1449 - () [10.3390/v14071449] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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N-dependent dynamics of root growth and nitrate and ammonium uptake are altered by the bacterium Herbaspirillum seropedicae in the cereal model Brachypodium distachyon
The journal of experimental botany 73(15), 5306–5321 () [10.1093/jxb/erac184] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Rice increases phosphorus uptake in strongly sorbing soils by intra‐root facilitation
Plant, cell & environment 45(3), 884-899 () [10.1111/pce.14285] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Root Growth and Architecture of Wheat and Brachypodium Vary in Response to Algal Fertilizer in Soil and Solution
Agronomy 12(2), 285 - () [10.3390/agronomy12020285] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Simulating Crop Root Systems Using OpenSimRoot
Plant Systems Biology New York, NY : Humana, Methods in Molecular Biology 2395, : 2nd ed., 293 - 323 () [10.1007/978-1-0716-1816-5_15] OpenAccess  Download fulltext Files  Download fulltextFulltext Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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The molecular basis of zinc homeostasis in cereals
Plant, cell & environment 45(5), 1339-1361 () [10.1111/pce.14257] Embargoed OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Phenotypic response to soil compaction varies among genotypes and correlates with plant size in sorghum
Plant and soil 472, 59 - 72 () [10.1007/s11104-021-05160-z] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Modulators or facilitators? Roles of lipids in plant root–microbe interactions
Trends in plant science 27(2), 180-190 () [10.1016/j.tplants.2021.08.004] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Loïc Pagès, founding scientist in root ecology and modelling
In silico plants 3(2), diab035 () [10.1093/insilicoplants/diab035] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements
The new phytologist 232(3), 973 - 1122 () [10.1111/nph.17572] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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The Metabolic Response of Brachypodium Roots to the Interaction with Beneficial Bacteria Is Affected by the Plant Nutritional Status
Metabolites 11(6), 358 - () [10.3390/metabo11060358] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Transcriptional regulation of ZIP genes is independent of local zinc status in Brachypodium shoots upon zinc deficiency and resupply
Plant, cell & environment 44(10), 3376 - 3397 () [10.1111/pce.14151] Embargoed OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Cost-Benefit Analysis of the Upland-Rice Root Architecture in Relation to Phosphate: 3D Simulations Highlight the Importance of S-Type Lateral Roots for Reducing the Pay-Off Time
Frontiers in Functional Plant Ecology 12, 641835 () [10.3389/fpls.2021.641835] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Motherly care: How Leymus chinensis ramets support their offspring exposed to saline-alkali and clipping stresses
The science of the total environment 801, 149675 - () [10.1016/j.scitotenv.2021.149675] Embargoed OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Assessment of plant density for barley and wheat using UAV multispectral imagery for high-throughput field phenotyping
Computers and electronics in agriculture 189, 106380 - () [10.1016/j.compag.2021.106380] Embargoed OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Comparison of numerical methods for radial solute transport to simulate uptake by plant roots
Rhizosphere 18, 100352 () [10.1016/j.rhisph.2021.100352] Embargoed OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Dividing the pie: A quantitative review on plant density responses
Plant, cell & environment 44(4), 1072-1094 () [10.1111/pce.13968] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Root traits as drivers of plant and ecosystem functioning: current understanding, pitfalls and future research needs
The new phytologist 232, 973-1122 () [10.1111/nph.17072]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Time-resolution of the shoot and root growth of the model cereal Brachypodium in response to inoculation with Azospirillum bacteria at low phosphorus and temperature
Plant growth regulation 93, 149–162 () [10.1007/s10725-020-00675-4] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Nitrogen acquisition, fixation and transfer in alfalfa-maize intercrops are increased through root contact and morphology responses tointerspecies competition
Journal of integrative agriculture 20(8), 2240-2254 () [10.1016/S2095-3119(20)63330-5] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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An Analysis of Soil Coring Strategies to Estimate Root Depth in Maize (Zea mays) and Common Bean (Phaseolus vulgaris)
Plant phenomics 2020, 1 - 20 () [10.34133/2020/3252703] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Spatially Resolved Root Water Uptake Determination Using a Precise Soil Water Sensor
Plant physiology 184(3), 1221 - 1235 () [10.1104/pp.20.00488] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Spatio-Temporal Variation in Water Uptake in Seminal and Nodal Root Systems of Barley Plants Grown in Soil
Frontiers in Functional Plant Ecology 11, 1247 () [10.3389/fpls.2020.01247] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Call for Participation: Collaborative Benchmarking of Functional-Structural Root Architecture Models. The Case of Root Water Uptake
Frontiers in Functional Plant Ecology 11, 316 () [10.3389/fpls.2020.00316] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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CH02 - Advances in root architectural modeling during the last decade
Understanding and improving crop root function UK : Burleigh Dodds Science Publishing, Advances in modelling plant root systems 34 pp. () OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Crop Improvement from Phenotyping Roots: Highlights Reveal Expanding Opportunities
Trends in plant science 25(1), 105-118 () [10.1016/j.tplants.2019.10.015] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Dynamics in plant roots and shoots minimize stress, save energy and maintain water and nutrient uptake
The new phytologist 225(3), 1111-1119 () [10.1111/nph.15955] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Energy costs of salt tolerance in crop plants
The new phytologist 225(3), 1072-1090 () [10.1111/nph.15864] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Phosphorus uptake from struvite is modulated by the nitrogen form applied
Journal of plant nutrition and soil science 183(1), 80-90 () [10.1002/jpln.201900109] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Soil compaction and the architectural plasticity of root systems
The journal of experimental botany 70(21), 6019–6034 () [10.1093/jxb/erz383] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass
The new phytologist 222(2), 1149 - 1160 () [10.1111/nph.15662] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Energy costs of salinity tolerance in crop plants
The new phytologist 221(1), 25 - 29 () [10.1111/nph.15555]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis
Molecular plant 12(6), 879-892 () [10.1016/j.molp.2019.01.003] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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The effect of pH on morphological and physiological root traits of Lupinus angustifolius treated with struvite as a recycled phosphorus source
Plant and soil 434(1-2), 65-78 () [10.1007/s11104-018-3787-2] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Plant density modifies root system architecture in spring barley (Hordeum vulgare L.) through a change in nodal root number
Plant and soil 439(1-2), 179-200 () [10.1007/s11104-018-3764-9]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Co-optimization of axial root phenotypes for nitrogen and phosphorus acquisition in common bean
Annals of botany 122(3), 485-499 () [10.1093/aob/mcy092]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Monitoring of Plant Protein Post-translational Modifications Using Targeted Proteomics
Frontiers in plant science Vol. 9, 1168 () [10.3389/fpls.2018.01168] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Ethylene modulates root cortical senescence in barley
Annals of botany 122(1), 95 - 105 () [10.1093/aob/mcy059]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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The effects of pH on root morphology and physiology of narrow-leaf lupin, grown with a recycled phosphorus source
XVIII International Plant Nutrition Colloquium with Boron and Manganese Satellite Meetings, IPNC 2017, CopenhagenCopenhagen, Denmark, 21 Aug 2017 - 24 Aug 20172017-08-212017-08-24 280-281 () BibTeX | EndNote: XML, Text | RIS

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Root Cortical Senescence Improves Growth under Suboptimal Availability of N, P, and K
Plant physiology 174(4), 2333–2347 () [10.1104/pp.17.00648]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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OpenSimRoot: Widening the scope and application of root architectural models
The new phytologist 215(3), - () [10.1111/nph.14641] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Root cortical senescence decreases root respiration, nutrient content, and radial water and nutrient transport in barley
Plant, cell & environment 40(8), 1392–1408 () [10.1111/pce.12933]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Plant genome and transcriptome annotations: from misconceptions to simple solutions
Briefings in bioinformatics bbw135, 1-13 () [10.1093/bib/bbw135] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Pampered inside, pestered outside? Differences and similarities between plants growing in controlled conditions and in the field
The new phytologist 212(4), 838–855 () [10.1111/nph.14243]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Impact of axial root growth angles on nitrogen acquisition in maize depends on environmental conditions
Annals of botany 118(3), 401-414 () [10.1093/aob/mcw112]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Sowing Density: A Neglected Factor Fundamentally Affecting Root Distribution and Biomass Allocation of Field Grown Spring Barley (Hordeum Vulgare L.)
Frontiers in Functional Plant Ecology 7, 944 () [10.3389/fpls.2016.00944] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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Quantitative 3D Analysis of Plant Roots growing in Soil using Magnetic Resonance Imaging
Plant physiology 170(3), 1176-1188 () [10.1104/pp.15.01388]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Phene Synergism between Root Hair Length and Basal Root Growth Angle for Phosphorus Acquisition
Plant physiology 167(4), 1430 - 1439 () [10.1104/pp.15.00145]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Root foraging elicits niche complementarity-dependent yield advantage in the ancient 'three sisters' (maize/bean/squash) polyculture
Annals of botany 114(8), 1719-1733 () [10.1093/aob/mcu191]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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The optimal lateral root branching density for maiz depends on nitrogen and phosphorus availability
Plant physiology 166(2), 590-602 () [10.1104/pp.113.233916]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Dynamic root growth and architecture responses to limiting nutrient availability: linking physiological models and experimentation
Biotechnology advances 32(1), 53–65 () [10.1016/j.biotechadv.2013.08.019] special issue: "Plant Biotechnology 2013: "Green for Good II"."  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Plant root system analysis from MRI images
Berlin : Springer, Communications in computer and information science 359, 411 - 425 () [10.1007/978-3-642-38241-3_28] BibTeX | EndNote: XML, Text | RIS

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Modelling root–soil interactions using three–dimensional models of root growth, architecture and function
Plant and soil 372(1-2), 93 - 124 () [10.1007/s11104-013-1769-y]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Modelling root plasticity and response of narrow-leafed lupin to heterogeneous phosphorus supply
Plant and soil 372(1-2), 319 - 337 () [10.1007/s11104-013-1741-x]  Download fulltext Files BibTeX | EndNote: XML, Text | RIS

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Modeling Resource Interactions Under Multiple Edaphic Stresses
Enhancing Understanding and Quantification of Soil-Root Growth Interactions. Madison, Wi. USA : DJ Timlin and LR Ahuja, Advances in Agricultural Systems Modeling. 4, 273 - 294 () BibTeX | EndNote: XML, Text | RIS

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3d reconstruction of plant roots from MRI images
International Conference on Computer Vision Theory and Applications, 2012, 1 - 9 BibTeX | EndNote: XML, Text | RIS

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Complementarity in Root Architecture for Nutrient Uptake in Ancient Maize/Bean and Maize/Bean/Squash Polycultures
Annals of botany 110(2), 521-534 () [10.1093/aob/mcs082] pmc  Download fulltext Files  Download fulltextFulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

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Pot size matters: a meta-analysis of the effects of rooting volume on plant growth
Functional plant biology 39, 839 - 850 () [10.1071/FP12049] OpenAccess  Download fulltext Files  Download fulltextFulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

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