Publications
Journal Article
Benefits and limits of biological nitrification inhibitors for plant nitrogen uptake and the environment
Scientific reports 14, 15027 (2024) [10.1038/s41598-024-65247-2]
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Journal Article - Online First
Modeling cassava root system architecture and the underlying dynamics in shoot–root carbon allocation during the early storage root bulking stage
Plant and soil -, - (2024) [10.1007/s11104-024-06771-y]
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Journal Article
More N fertilizer, more maize, and less alfalfa: maize benefits from its higher N uptake per unit root length
Frontiers in Functional Plant Ecology 15, 1338521 (2024) [10.3389/fpls.2024.1338521]
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Journal Article
Pitfalls and potential of high-throughput plant phenotyping platforms
Frontiers in plant science 14, 1233794 (2023) [10.3389/fpls.2023.1233794] special issue: "Plant Phenotyping for a Sustainable Future"
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Journal Article
Collaborative benchmarking of functional-structural root architecture models: Quantitative comparison of simulated root water uptake
In silico plants 5(1), diad005 (2023) [10.1093/insilicoplants/diad005]
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Journal Article
Molecular mechanisms of Pseudomonas assisted plant nitrogen uptake - opportunities for modern agriculture
Molecular plant microbe interactions 36(9), 536-548 (2023) [10.1094/MPMI-10-22-0223-CR]
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Journal Article
Plant root plasticity during drought and recovery: What do we know and where to go?
Frontiers in plant science 14, 1084355 (2023) [10.3389/fpls.2023.1084355]
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Journal Article
Deep‐water uptake under drought improved due to locally increased root conductivity in maize, but not in faba bean
Plant, cell & environment 46(7), 2046-2060 (2023) [10.1111/pce.14587]
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Journal Article
Nutrient deficiency effects on root architecture and root-to-shoot ratio in arable crops
Frontiers in plant science 13, 1067498 (2023) [10.3389/fpls.2022.1067498]
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Journal Article
Shallow roots of different crops have greater water uptake rates per unit length than deep roots in well-watered soil
Plant and soil 481(1-2), 475–493 (2022) [10.1007/s11104-022-05650-8]
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Journal Article
Stomatal conductance tracks soil-to-leaf hydraulic conductance in faba bean and maize during soil drying
Plant physiology 190(4), 2279 - 2294 (2022) [10.1093/plphys/kiac422]
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Journal Article
Plant Growth Promotion and Heat Stress Amelioration in Arabidopsis Inoculated with Paraburkholderia phytofirmans PsJN Rhizobacteria Quantified with the GrowScreen-Agar II Phenotyping Platform
Plants 11(21), 2927 - (2022) [10.3390/plants11212927]
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Journal Article
Assessing the Storage Root Development of Cassava with a New Analysis Tool
Plant phenomics 2022, 1 - 15 (2022) [10.34133/2022/9767820]
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Journal Article
Rhizosphere models: their concepts and application to plant-soil ecosystems
Plant and soil 474(1-2), 17 - 55 (2022) [10.1007/s11104-021-05201-7]
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Journal Article
Isolation of Novel Xanthomonas Phages Infecting the Plant Pathogens X. translucens and X. campestris
Viruses 14(7), 1449 - (2022) [10.3390/v14071449]
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Journal Article
N-dependent dynamics of root growth and nitrate and ammonium uptake are altered by the bacterium Herbaspirillum seropedicae in the cereal model Brachypodium distachyon
The journal of experimental botany 73(15), 5306–5321 (2022) [10.1093/jxb/erac184]
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Journal Article
Rice increases phosphorus uptake in strongly sorbing soils by intra‐root facilitation
Plant, cell & environment 45(3), 884-899 (2022) [10.1111/pce.14285]
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Journal Article
Root Growth and Architecture of Wheat and Brachypodium Vary in Response to Algal Fertilizer in Soil and Solution
Agronomy 12(2), 285 - (2022) [10.3390/agronomy12020285]
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Contribution to a book
Simulating Crop Root Systems Using OpenSimRoot
Plant Systems Biology
New York, NY : Humana, Methods in Molecular Biology 2395, : 2nd ed., 293 - 323 (2022) [10.1007/978-1-0716-1816-5_15]
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Journal Article
The molecular basis of zinc homeostasis in cereals
Plant, cell & environment 45(5), 1339-1361 (2022) [10.1111/pce.14257]
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Journal Article
Phenotypic response to soil compaction varies among genotypes and correlates with plant size in sorghum
Plant and soil 472, 59 - 72 (2022) [10.1007/s11104-021-05160-z]
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Journal Article
Modulators or facilitators? Roles of lipids in plant root–microbe interactions
Trends in plant science 27(2), 180-190 (2022) [10.1016/j.tplants.2021.08.004]
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Journal Article
Loïc Pagès, founding scientist in root ecology and modelling
In silico plants 3(2), diab035 (2021) [10.1093/insilicoplants/diab035]
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Journal Article
A starting guide to root ecology: strengthening ecological concepts and standardising root classification, sampling, processing and trait measurements
The new phytologist 232(3), 973 - 1122 (2021) [10.1111/nph.17572]
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Journal Article
The Metabolic Response of Brachypodium Roots to the Interaction with Beneficial Bacteria Is Affected by the Plant Nutritional Status
Metabolites 11(6), 358 - (2021) [10.3390/metabo11060358]
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Journal Article
Transcriptional regulation of ZIP genes is independent of local zinc status in Brachypodium shoots upon zinc deficiency and resupply
Plant, cell & environment 44(10), 3376 - 3397 (2021) [10.1111/pce.14151]
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Journal Article
Cost-Benefit Analysis of the Upland-Rice Root Architecture in Relation to Phosphate: 3D Simulations Highlight the Importance of S-Type Lateral Roots for Reducing the Pay-Off Time
Frontiers in Functional Plant Ecology 12, 641835 (2021) [10.3389/fpls.2021.641835]
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Journal Article
Motherly care: How Leymus chinensis ramets support their offspring exposed to saline-alkali and clipping stresses
The science of the total environment 801, 149675 - (2021) [10.1016/j.scitotenv.2021.149675]
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Journal Article
Assessment of plant density for barley and wheat using UAV multispectral imagery for high-throughput field phenotyping
Computers and electronics in agriculture 189, 106380 - (2021) [10.1016/j.compag.2021.106380]
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Journal Article
Comparison of numerical methods for radial solute transport to simulate uptake by plant roots
Rhizosphere 18, 100352 (2021) [10.1016/j.rhisph.2021.100352]
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Journal Article
Dividing the pie: A quantitative review on plant density responses
Plant, cell & environment 44(4), 1072-1094 (2021) [10.1111/pce.13968]
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Journal Article
Root traits as drivers of plant and ecosystem functioning: current understanding, pitfalls and future research needs
The new phytologist 232, 973-1122 (2021) [10.1111/nph.17072]
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Journal Article
Time-resolution of the shoot and root growth of the model cereal Brachypodium in response to inoculation with Azospirillum bacteria at low phosphorus and temperature
Plant growth regulation 93, 149–162 (2021) [10.1007/s10725-020-00675-4]
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Journal Article
Nitrogen acquisition, fixation and transfer in alfalfa-maize intercrops are increased through root contact and morphology responses tointerspecies competition
Journal of integrative agriculture 20(8), 2240-2254 (2020) [10.1016/S2095-3119(20)63330-5]
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Journal Article
An Analysis of Soil Coring Strategies to Estimate Root Depth in Maize (Zea mays) and Common Bean (Phaseolus vulgaris)
Plant phenomics 2020, 1 - 20 (2020) [10.34133/2020/3252703]
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Journal Article
Spatially Resolved Root Water Uptake Determination Using a Precise Soil Water Sensor
Plant physiology 184(3), 1221 - 1235 (2020) [10.1104/pp.20.00488]
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Journal Article
Spatio-Temporal Variation in Water Uptake in Seminal and Nodal Root Systems of Barley Plants Grown in Soil
Frontiers in Functional Plant Ecology 11, 1247 (2020) [10.3389/fpls.2020.01247]
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Journal Article
Call for Participation: Collaborative Benchmarking of Functional-Structural Root Architecture Models. The Case of Root Water Uptake
Frontiers in Functional Plant Ecology 11, 316 (2020) [10.3389/fpls.2020.00316]
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Contribution to a book
CH02 - Advances in root architectural modeling during the last decade
Understanding and improving crop root function
UK : Burleigh Dodds Science Publishing, Advances in modelling plant root systems 34 pp. (2020)
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Journal Article
Crop Improvement from Phenotyping Roots: Highlights Reveal Expanding Opportunities
Trends in plant science 25(1), 105-118 (2020) [10.1016/j.tplants.2019.10.015]
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Journal Article
Dynamics in plant roots and shoots minimize stress, save energy and maintain water and nutrient uptake
The new phytologist 225(3), 1111-1119 (2020) [10.1111/nph.15955]
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Journal Article
Energy costs of salt tolerance in crop plants
The new phytologist 225(3), 1072-1090 (2020) [10.1111/nph.15864]
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Journal Article
Phosphorus uptake from struvite is modulated by the nitrogen form applied
Journal of plant nutrition and soil science 183(1), 80-90 (2019) [10.1002/jpln.201900109]
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Journal Article
Soil compaction and the architectural plasticity of root systems
The journal of experimental botany 70(21), 6019–6034 (2019) [10.1093/jxb/erz383]
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Journal Article
Multilab EcoFAB study shows highly reproducible physiology and depletion of soil metabolites by a model grass
The new phytologist 222(2), 1149 - 1160 (2019) [10.1111/nph.15662]
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Journal Article
Energy costs of salinity tolerance in crop plants
The new phytologist 221(1), 25 - 29 (2019) [10.1111/nph.15555]
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Journal Article
MapMan4: a refined protein classification and annotation framework applicable to multi-omics data analysis
Molecular plant 12(6), 879-892 (2019) [10.1016/j.molp.2019.01.003]
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Journal Article
The effect of pH on morphological and physiological root traits of Lupinus angustifolius treated with struvite as a recycled phosphorus source
Plant and soil 434(1-2), 65-78 (2019) [10.1007/s11104-018-3787-2]
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Journal Article
Plant density modifies root system architecture in spring barley (Hordeum vulgare L.) through a change in nodal root number
Plant and soil 439(1-2), 179-200 (2019) [10.1007/s11104-018-3764-9]
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Journal Article
Co-optimization of axial root phenotypes for nitrogen and phosphorus acquisition in common bean
Annals of botany 122(3), 485-499 (2018) [10.1093/aob/mcy092]
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Journal Article
Monitoring of Plant Protein Post-translational Modifications Using Targeted Proteomics
Frontiers in plant science Vol. 9, 1168 (2018) [10.3389/fpls.2018.01168]
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Journal Article
Ethylene modulates root cortical senescence in barley
Annals of botany 122(1), 95 - 105 (2018) [10.1093/aob/mcy059]
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Contribution to a conference proceedings/Contribution to a book
The effects of pH on root morphology and physiology of narrow-leaf lupin, grown with a recycled phosphorus source
XVIII International Plant Nutrition Colloquium with Boron and Manganese Satellite Meetings, IPNC 2017, CopenhagenCopenhagen, Denmark, 21 Aug 2017 - 24 Aug 2017
280-281 (2017)
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Journal Article
Root Cortical Senescence Improves Growth under Suboptimal Availability of N, P, and K
Plant physiology 174(4), 2333–2347 (2017) [10.1104/pp.17.00648]
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Journal Article
OpenSimRoot: Widening the scope and application of root architectural models
The new phytologist 215(3), - (2017) [10.1111/nph.14641]
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Journal Article
Root cortical senescence decreases root respiration, nutrient content, and radial water and nutrient transport in barley
Plant, cell & environment 40(8), 1392–1408 (2017) [10.1111/pce.12933]
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Journal Article
Plant genome and transcriptome annotations: from misconceptions to simple solutions
Briefings in bioinformatics bbw135, 1-13 (2017) [10.1093/bib/bbw135]
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Journal Article
Pampered inside, pestered outside? Differences and similarities between plants growing in controlled conditions and in the field
The new phytologist 212(4), 838–855 (2016) [10.1111/nph.14243]
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Journal Article
Impact of axial root growth angles on nitrogen acquisition in maize depends on environmental conditions
Annals of botany 118(3), 401-414 (2016) [10.1093/aob/mcw112]
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Journal Article
Sowing Density: A Neglected Factor Fundamentally Affecting Root Distribution and Biomass Allocation of Field Grown Spring Barley (Hordeum Vulgare L.)
Frontiers in Functional Plant Ecology 7, 944 (2016) [10.3389/fpls.2016.00944]
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Journal Article
Quantitative 3D Analysis of Plant Roots growing in Soil using Magnetic Resonance Imaging
Plant physiology 170(3), 1176-1188 (2016) [10.1104/pp.15.01388]
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Journal Article
Phene Synergism between Root Hair Length and Basal Root Growth Angle for Phosphorus Acquisition
Plant physiology 167(4), 1430 - 1439 (2015) [10.1104/pp.15.00145]
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Journal Article
Root foraging elicits niche complementarity-dependent yield advantage in the ancient 'three sisters' (maize/bean/squash) polyculture
Annals of botany 114(8), 1719-1733 (2014) [10.1093/aob/mcu191]
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Journal Article
The optimal lateral root branching density for maiz depends on nitrogen and phosphorus availability
Plant physiology 166(2), 590-602 (2014) [10.1104/pp.113.233916]
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Journal Article
Dynamic root growth and architecture responses to limiting nutrient availability: linking physiological models and experimentation
Biotechnology advances 32(1), 53–65 (2014) [10.1016/j.biotechadv.2013.08.019] special issue: "Plant Biotechnology 2013: "Green for Good II"."
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Contribution to a book
Plant root system analysis from MRI images
Berlin : Springer, Communications in computer and information science 359, 411 - 425 (2013) [10.1007/978-3-642-38241-3_28]
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Journal Article
Modelling root–soil interactions using three–dimensional models of root growth, architecture and function
Plant and soil 372(1-2), 93 - 124 (2013) [10.1007/s11104-013-1769-y]
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Journal Article
Modelling root plasticity and response of narrow-leafed lupin to heterogeneous phosphorus supply
Plant and soil 372(1-2), 319 - 337 (2013) [10.1007/s11104-013-1741-x]
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Contribution to a book
Modeling Resource Interactions Under Multiple Edaphic Stresses
Enhancing Understanding and Quantification of Soil-Root Growth Interactions.
Madison, Wi. USA : DJ Timlin and LR Ahuja, Advances in Agricultural Systems Modeling. 4, 273 - 294 (2013)
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Contribution to a conference proceedings/Contribution to a book
3d reconstruction of plant roots from MRI images
International Conference on Computer Vision Theory and Applications, 2012, 1 - 9
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Journal Article
Complementarity in Root Architecture for Nutrient Uptake in Ancient Maize/Bean and Maize/Bean/Squash Polycultures
Annals of botany 110(2), 521-534 (2012) [10.1093/aob/mcs082]
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Journal Article
Pot size matters: a meta-analysis of the effects of rooting volume on plant growth
Functional plant biology 39, 839 - 850 (2012) [10.1071/FP12049]
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