Workshop "Supercomputing for Neuroscientists"

Start
3rd November 2015 08:00 AM
End
3rd November 2015 04:00 PM
Location
Jülich Supercomputing Centre, Rotunda, building 16.4, room 301

How High-Performance Computing (HPC) can help your neuroscience projects

Workshop "Supercomputing for Neuroscientists"

Neuroscience today is tackling problems of increasing complexity and scale as exemplified by projects such as the Human Brain Project. To fulfill the requirements of computationally intensive simulations and analyses of large data sets, applications suitable for High Performance Computing (HPC) systems must be developed, or adapted from algorithms originally designed for PCs and small clusters.

This workshop aims at bringing neuroscientists interested in using HPC technology for their projects together with experts from the Jülich Supercomputing Centre’s Simulation Laboratory Neuroscience, whose main goal is to bridge the gap between Computational Neuroscience and HPC.

During the workshop, the participants will learn about HPC and how it can be used as an instrument for neuroscience. The SimLab will present some current projects and collaborations as examples of how neuroscience can benefit from making the transition and porting code to supercomputers. Examples include brain modeling and simulation and the processing and analysis of brain imaging data. Experts from the JSC will explain how to get access to Jülich’s JUQUEEN and JURECA supercomputers and how the SimLab can support neuroscience groups in using these systems. While this part of the workshop is primarily intended for PIs whose affiliation is in Germany, and who may thus apply for computing time on the Jülich supercomputers through the national GCS and NIC calls, it will also touch on how European supercomputing resources, including those of Jülich, may be accessed by PIs from outside of Germany through the European PRACE access schemes.

Program

Monday, 2 November 2015

19:00-21:00 Pre-Workshop Dinner (Registration required)

Restaurant Rossini
Bauhofstr. 28
Jülich

Tuesday, 3 November 2015

Time

Topic

Chair / Speaker

09:00 - 09:15

Welcome

Thomas Lippert (JSC)

A. Morrison (SimLab Neuroscience)

09:15 - 09:45

Round of introduction

All

09:45 - 11:15

What is High Performance Computing (HPC)?
An Introduction to HPC

- Supercomputer architectures (50 min.)

- Characteristics of HPC algorithms (20 min.)
- Parallel programming models (20 min.)

SimLab Neuroscience  

A. Peyser

S. Kunkel

P. Baumeister

11:15 – 11:45

Coffee break

 

11:45 – 12:25

How can Neuroscience benefit from HPC?
Examples of current neuroscience projects on the Jülich supercomputers  

- Simulation: NEST (20 min.)
- Image processing and analysis:

3-D Polarized Light Imaging (20 min.)

Partners 
S. van Albada (INM-6)

M. Axer (INM-1)

12:25 – 12:40

What are your projects?
Focus on participants’ projects: Spotlight Talk Session
- A round of short introductions by participants to their posters

Participants

A. Do Lam-Ruschewski

12:40 - 12:45

Workshop group photo

 

12:45 - 14:15

Lunch buffet with poster session

 

14:15 - 16:15

How can you use HPC for your projects?
- Application process and access to supercomputers (20 min.)

- Support by SimLab Neuroscience (20 min)

- Tools and infrastructure (25 min.)

- Outlook: HPC Platform of the Human Brain Project (15 min)

Time for questions included

SimLab Neuroscience/ JSC  

F. Janetzko (NIC Coordination Office)
A. Morrison

S. Diaz

A. Lührs

16:15 - 16:30

Closing remarks

A. Morrison (SimLab Neuroscience)

16:30 - 17:00

Farewell coffee
Time for last minute questions

 

Posters & Spotlight Talk

Poster Details:

- The suggested poster size is A0 portrait.

- Poster board size is 116cm x 147cm (width x height).

- Please bring and mount your posters before the workshop will start on Tuesday (3 November, 9:00 h).

- Push pins will be provided for mounting your poster onto the boards.

Spotlight Talk:

We encourage all participants who have registered a poster to additionally highlight the core issues of their poster in a spotlight talk (3 - 5 minutes per talk).

Therefore, please prepare a maximum of 3 slides (pptx/ pdf), and send them no later than 2 November to: slns@fz-juelich.de

Organizers

Last Modified: 16.11.2022