Journal articles 2013
Journal Article
Editorial
Journal of cellular automata 8(5-6), 313-320 (2013)
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NVIDIA Application Lab at Jülich
Innovatives Supercomputing in Deutschland 11(1), 97-99 (2013)
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Zebrafish crypt neurons project to a single, identified mediodorsal glomerulus
Scientific reports 3, 2063 (2013) [10.1038/srep02063]
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Early experiences with scientific applications on the IBM Blue Gene/Q supercomputer
IBM journal of research and development 57(1/2), 14:1 - 14:9 (2013) [10.1147/JRD.2012.2234331] special issue: "IBM Blue Gene/Q"
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BigBrain: An Ultrahigh-Resolution 3D Human Brain Model
Science 340(6139), 1472 - 1475 (2013) [10.1126/science.1235381]
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IPv6 First Hop Security - Nahkampf
IX kompakt 4/2013, 62-65 (2013)
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CHANGES Workshop
Innovatives Supercomputing in Deutschland 11(2), 101 (2013)
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Radiation pressure-assisted acceleration of ions using multi-component foils in high-intensity laser–matter interactions
New journal of physics 15(3), 033031 - (2013) [10.1088/1367-2630/15/3/033031]
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Hydrogen bond network topology in liquid water and methanol: a graph theory approach
Physical chemistry, chemical physics 15(36), 15163 - 15171 (2013) [10.1039/c3cp52271g]
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Nucleon mass and sigma term from lattice QCD with two light fermion flavors
Nuclear physics <Amsterdam> / B 866(1), 1 - 25 (2013) [10.1016/j.nuclphysb.2012.08.009]
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Cooperative transport in nanochannels
Physical review / E 88(1), 010703 (2013) [10.1103/PhysRevE.88.010703]
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Extending the scope of the controlled logical clock
Cluster computing 16(1), 171 - 189 (2013) [10.1007/s10586-011-0181-8]
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Is There a Flavor Hierarchy in the Deconfinement Transition of QCD?
Physical review letters 111(20), 202302 (2013) [10.1103/PhysRevLett.111.202302]
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PRACE Projects meet in Varna
Innovatives Supercomputing in Deutschland 11(2), 7-8 (2013)
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Collecting pedestrian trajectories
Neurocomputing 100, 127 - 133 (2013) [10.1016/j.neucom.2012.01.036]
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Traffic and Granular Flow Conference celebrates 10th Edition by returning to Jülich
Innovatives Supercomputing in Deutschland 11(2), 110 (2013)
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Freeze-Out Parameters: Lattice Meets Experiment
Physical review letters 111(6), 062005 (2013) [10.1103/PhysRevLett.111.062005]
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Isospin Splittings in the Light-Baryon Octet from Lattice QCD and QED
Physical review letters 111(25), 252001 (2013) [10.1103/PhysRevLett.111.252001]
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SU(2) chiral perturbation theory low-energy constants from 2+1 flavor staggered lattice simulations
Physical review / D 88(1), 014513 (2013) [10.1103/PhysRevD.88.014513]
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Journal Article
First JUQUEEN Porting and Tuning Workshop
Innovatives Supercomputing in Deutschland 11(1), 86-87 (2013)
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High-Q Club – The highest scaling Codes on JUQUEEN
Innovatives Supercomputing in Deutschland 11(2), 106-107 (2013)
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Performance of stairs – Fundamental diagram and topographical measurements
Transportation research / C 37, 268-278 (2013) [10.1016/j.trc.2013.05.002]
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A Simple Rule for Dendritic Spine and Axonal Bouton Formation Can Account for Cortical Reorganization after Focal Retinal Lesions
PLoS Computational Biology 9(10), e1003259 (2013) [10.1371/journal.pcbi.1003259]
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Outbreaks of coinfections: The critical role of cooperativity
epl 104(5), 50001 (2013) [10.1209/0295-5075/104/50001]
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Journal Article
Dominant-negative effects in prion diseases: insights from molecular dynamics simulations on mouse prion protein chimeras
Journal of biomolecular structure & dynamics: JBSD 31(8), 829-840 (2013) [10.1080/07391102.2012.712477]
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Role of prion disease-linked mutations in the intrinsically disordered N-terminal domain of the prion protein
Journal of chemical theory and computation 9(11), 5158-5167 (2013) [10.1021/ct400534k]
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Heterogeneous Resource Federation with a Centralized Security Model for Information Extraction
Journal of internet services and applications 4, 10 (2013) [10.1186/1869-0238-4-10] special issue: "Data-intensive Computing"
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Redox reactions with empirical potentials: Atomistic battery discharge simulations
The journal of chemical physics 139(6), 064106 - (2013) [10.1063/1.4817772]
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Towards time-dependent, non-equilibrium charge-transfer force fields
The European physical journal / B 86(7), 337 (2013) [10.1140/epjb/e2013-40047-x]
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Alternative dissipation mechanisms and the effect of the solvent in friction between polymer brushes on rough surfaces
Soft matter 9(30), 7234 - 7241 (2013) [10.1039/c3sm50491c]
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JUROPA-3 - A Prototype for the Next-Generation HPC Cluster
Innovatives Supercomputing in Deutschland 11(2), 86-87 (2013)
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Journal Article
Block iterative eigensolvers for sequences of correlated eigenvalue problems
Computer physics communications 184(11), 2478 - 2488 (2013) [10.1016/j.cpc.2013.06.017]
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Journal Article
A Molecular Dynamics Simulation-Based Interpretation of Nuclear Magnetic Resonance Multidimensional Heteronuclear Spectra of α-Synuclein·Dopamine Adducts
Biochemistry 52(38), 6672 - 6683 (2013) [10.1021/bi400367r]
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Taste-split staggered actions: eigenvalues, chiralities and Symanzik improvement
Physical review / D 87(11), 114501 (2013) [10.1103/PhysRevD.87.114501]
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Journal Article
2-Norm Error Bounds and Estimates for Lanczos Approximations to Linear Systems and Rational Matrix Functions
SIAM journal on matrix analysis and applications 34(3), 1046 - 1065 (2013) [10.1137/110859749]
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Journal Article
Dry Friction Between Laser-Patterned Surfaces: Role of Alignment, Structural Wavelength and Surface Chemistry
Tribology letters 49(1), 193 - 202 (2013) [10.1007/s11249-012-0057-y]
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Parallel universal access layer: A scalable I/O library for integrated tokamak modeling
Computer physics communications 184(3), 638–646 (2013) [10.1016/j.cpc.2012.10.024]
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Journal Article
MegaGauss magnetic field generation by ultra-short pulses at relativistic intensities
Plasma physics and controlled fusion 55(3), 035002 (2013) [10.1088/0741-3335/55/3/035002]
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Observation of Gigawatt-Class THz Pulses from a Compact Laser-Driven Particle Accelerator
Physical review letters 111(7), 074802 (2013) [10.1103/PhysRevLett.111.074802]
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On the continuum time limit of reaction-diffusion systems
epl 103(5), 50009 - (2013) [10.1209/0295-5075/103/50009]
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Journal Article
Polymer collapse and crystallization in bond fluctuation models
epl 103(2), 26003 - (2013) [10.1209/0295-5075/103/26003]
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Journal Article
Two-Dimensional SIR Epidemics with Long Range Infection
Journal of statistical physics 153(2), 289 - 311 (2013) [10.1007/s10955-013-0824-7]
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Journal Article
SIR epidemics with long-range infection in one dimension
Journal of statistical mechanics: theory and experiment 2013(04), P04004 - (2013) [10.1088/1742-5468/2013/04/P04004]
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Journal Article
Scattering in infrared radiative transfer: A comparison between the spectrally averaging model JURASSIC and the line-by-line model KOPRA
Journal of quantitative spectroscopy & radiative transfer 127, 102 - 118 (2013) [10.1016/j.jqsrt.2013.05.004]
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Journal Article
Volcanic ash detection with infrared limb sounding: MIPAS observations and radiative transfer simulations
Atmospheric measurement techniques discussions 6(6), 9939 - 9991 (2013) [10.5194/amtd-6-9939-2013]
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Detection of volcanic sulfate aerosol with Envisat MIPAS shown for the Kasatochi, Sarychev, and Nabro eruptions
Geophysical research abstracts 15, EGU2013-3504 (2013)
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Radiative transfer simulations of PSC signatures measured by CRISTA-NF during the RECONCILE campaign in winter 2009/2010
Geophysical research abstracts 15, EGU2013-715 (2013)
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Journal Article
Effects of the interaction range on strucrural phases of flexible polymers
The journal of chemical physics: bridges a gap between journals of physics and journals of chemistry 138(7), 074905 (2013) [10.1063/1.4790615]
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Journal Article
End of the HPC-FF Era
Innovatives Supercomputing in Deutschland 11(2), 82-85 (2013)
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A scalable infrastructure for the performance analysis of passive target synchronization
Parallel computing 39(3), 132-145 (2013) [10.1016/j.parco.2012.09.002]
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Journal Article
A Global View of Stratospheric Gravity Wave Hotspots Located with Atmospheric Infrared Sounder Observations
Journal of geophysical research / Atmospheres 118(2), 416–434 (2013) [10.1029/2012JD018658]
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Official Inauguration of the Supercomputer JUQUEEN at JSC
Innovatives Supercomputing in Deutschland 11(1), 4-5 (2013)
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Journal Article
Laboratory Experiments on Crowd Dynamics
Innovatives Supercomputing in Deutschland 11(2), 102-103 (2013)
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Journal Article
UNICORE Summit 2013
Innovatives Supercomputing in Deutschland 11(2), 111 (2013)
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Equilibration and thermalization of classical systems
New journal of physics 15(3), 033009 (2013) [10.1088/1367-2630/15/3/033009]
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Journal Article
Quantum decoherence scaling with bath size: Importance of dynamics, connectivity, and randomness
Physical review / A 87(2), 022117 (2013) [10.1103/PhysRevA.87.022117]
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GROMEX – Unified Long-range Electrostatics and Flexible Ionization
Innovatives Supercomputing in Deutschland 11(2), 72-75 (2013)
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JSC Guest Student Programme on Scientific Computing 2013
Innovatives Supercomputing in Deutschland 11(2), 104-105 (2013)
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Journal Article
Observations of filamentary structures near the vortex edge in the Arctic winter lower stratosphere
Atmospheric chemistry and physics 13(21), 10859 - 10871 (2013) [10.5194/acp-13-10859-2013]
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Journal Article
Parallel real time computation of large scale pedestrian evacuations
Advances in engineering software 60-61, 98 - 103 (2013) [10.1016/j.advengsoft.2012.10.001]
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Journal Article
Simulating the Evolution of Binary Stars in Stellar Clusters
Innovatives Supercomputing in Deutschland 11(1), 42-45 (2013)
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Analyzing the basic principles of tissue microarray data measuring the cooperative phenomena of marker proteins in invasive breast cancer
Open access bioinformatics 5, 1 - 21 (2013) [10.2147/OAB.S36565]
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Dissecting the FEAST algorithm for generalized eigenproblems
Journal of computational and applied mathematics 244, 1 - 9 (2013) [10.1016/j.cam.2012.11.014]
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Information theoretic aspects of the two-dimensional Ising model
Physical review / E 87(2), 022128 (2013) [10.1103/PhysRevE.87.022128]
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Journal Article
HD(CP)²: High Definition Clouds and Precipitation for Climate Prediction
Innovatives Supercomputing in Deutschland 11(1), 60-62 (2013)
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Jülich Supercomputing Centre contributes to visionary "Human Brain Project"
Innovatives Supercomputing in Deutschland 11(2), 108-109 (2013)
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Atomic force microscopy of confined liquids using the thermal bending fluctuations of the cantilever
Physical review / E 87(6), 062406 (2013) [10.1103/PhysRevE.87.062406]
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Modeling pedestrian space in complex building for efficient pedestrian traffic simulation
Automation in construction 30, 25 - 36 (2013) [10.1016/j.autcon.2012.11.032]
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Journal Article
Implicit Coupling of One-Dimensional and Three-Dimensional Blood Flow Models with Compliant Vessels
Multiscale modeling & simulation 11(2), 474–506 (2013) [10.1137/120867408]
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International Workshop on Cooperative Quantum Dynamics and Its Control (CQDC2012)
Innovatives Supercomputing in Deutschland 11(1), 95 (2013)
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Journal Article
Comment on “Experimental Test of an Event-Based Corpuscular Model Modification as an Alternative to Quantum Mechanics”
Journal of the Physical Society of Japan 82(8), 086001 - (2013) [10.7566/JPSJ.82.086001]
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Journal Article
Stratospheric loss and atmospheric lifetimes of CFC-11 and CFC-12 derived from satellite observations
Atmospheric chemistry and physics 13(8), 4253 - 4263 (2013) [10.5194/acp-13-4253-2013]
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Folding of Top7 in unbiased all-atom Monte Carlo simulations
Proteins 81(8), 1446 - 1456 (2013) [10.1002/prot.24295]
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Journal Article
The Catwalk Project - A quick Development Path for Performance Models
Innovatives Supercomputing in Deutschland 11(2), 68-71 (2013)
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HOPSA – A big Jump forward in HPC System and Application Monitoring
Innovatives Supercomputing in Deutschland 11(2), 76-81 (2013)
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NIC Workshop: Hybrid Particle-Continuum Methods in Computational Materials Physics
Innovatives Supercomputing in Deutschland 11(1), 96 (2013)
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PRACE: Results of the 5th and 6th Regular Calls
Innovatives Supercomputing in Deutschland 11(1), 9 (2013)
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PRACE: Results of the 7th Regular Call
Innovatives Supercomputing in Deutschland 11(2), 6 (2013)
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Simulation Lab Neuroscience launched
Innovatives Supercomputing in Deutschland 11(1), 100-101 (2013)
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Finite-size scaling in the interfacial stiffness of rough elastic contacts
Physical review / E 87(6), 062809 (2013) [10.1103/PhysRevE.87.062809]
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The Multiradical Character of One- and Two-Dimensional Graphene Nanoribbons
Angewandte Chemie / International edition 52(9), 2581 - 2584 (2013) [10.1002/anie.201207671]
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Workshop on Blue Gene Active Storage
Innovatives Supercomputing in Deutschland 11(1), 92-94 (2013)
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Journal Article
Contact Mechanics of Laser-Textured Surfaces
Tribology letters 50(1), 41-48 (2013) [10.1007/s11249-012-0064-z]
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Journal Article
A Finite Element Method for Spatially Resolved Simulation of Packed Bed Chromatography
Proceedings in applied mathematics and mechanics 13(1), 511 - 512 (2013) [10.1002/pamm.201310248]
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A data infrastructure reference model with applications: towards realization of a ScienceTube vision with a data replication service
Journal of internet services and applications 4(1), 1 - (2013) [10.1186/1869-0238-4-1]
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Computational Studies on the Prion Protein
Current topics in medicinal chemistry 13(19), 2419 - 2431 (2013) [10.2174/15680266113136660170]
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Ligand Binding on Intrinsic Disordered Proteins: Focus on Human Alpha-Synuclein
Biophysical journal 104(2), 379a (2013) [10.1016/j.bpj.2012.11.2111]
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Journal Article
Nonadiabatic Photodynamics of a Retinal Model in Polar and Nonpolar Environment
The journal of physical chemistry <Washington, DC> / A 117(13), 2790 - 2799 (2013) [10.1021/jp400401f]
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Asymptotic Series of Generalized Lambert W Function
ACM Communications in computer algebra 47(185), 75 - 83 (2013)
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Ultrafast non-adiabatic dynamics of ethylene including Rydberg states
Molecular physics 111, 1 - 12 (2013) [10.1080/00268976.2013.813590]
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Son, Grassberger, and Paczuski Reply:
Physical review letters 111(18), 189602 (2013) [10.1103/PhysRevLett.111.189602]
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In Situ Root System Architecture Extraction from Magnetic Resonance Imaging for Water Uptake Modeling
Vadose zone journal 12(1), 9 (2013) [10.2136/vzj2012.0019]
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Journal Article
Relating Polarized Light Imaging Data Across Scales
Imaging the brain at different scales: How to integrate multi-scale structural information?, AntwerpAntwerp, Belgium, 2 Sep 2013 - 6 Sep 2013
Frontiers in neuroinformatics 7, 3 (2013) [10.3389/conf.fninf.2013.10.00029]
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CECAM Tutorials at JSC
Innovatives Supercomputing in Deutschland 11(2), 100 (2013)
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Comparison of scalable fast methods for long-range interactions
Physical review / E 88(6), 063308 (2013) [10.1103/PhysRevE.88.063308]
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Ancestral amphibian v2rs are expressed in the main olfactory epithelium
Proceedings of the National Academy of Sciences of the United States of America 110(19), 7714 - 7719 (2013) [10.1073/pnas.1302088110]
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Parallel Brownian dynamics simulations with the message-passing and PGAS programming models
Computer physics communications 184(4), 1191-1202 (2013) [10.1016/j.cpc.2012.12.015]
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Parallel simulation of Brownian dynamics on shared memory systems with OpenMP and Unified Parallel C
The journal of supercomputing 65(3), 1050 - 1062 (2013) [10.1007/s11227-012-0843-1]
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Design and Implementation of an Extended Collectives Library for Unified Parallel C
Journal of computer science and technology 28(1), 72 - 89 (2013) [10.1007/s11390-013-1313-9]
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Filamentary structure in chemical tracer distributions near the subtropical jet following a wave breaking event
Atmospheric chemistry and physics 13(20), 10517-10534 (2013) [10.5194/acp-13-10517-2013]
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Neural system prediction and identification challenge
Frontiers in neuroinformatics 7(43), 1-10 (2013) [10.3389/fninf.2013.00043]
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Reconciliation of essential process parameters for an enhanced predictability of Arctic stratospheric ozone loss and its climate interactions (RECONCILE): activities and results
Atmospheric chemistry and physics 13(18), 9233 - 9268 (2013) [10.5194/acp-13-9233-2013]
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Stratospheric aerosol enhancements from the Nabro eruption in 2011: an investigation of possible transport pathways using trajectory ensembles
Geophysical research abstracts 15, EGU2013-12453 (2013)
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Spatially Resolved Electronic Correlations in Nanoclusters
Contributions to plasma physics 53(4-5), 254 - 262 (2013) [10.1002/ctpp.201200097]
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Screening and collective modes in disordered graphene antidot lattices
Physical review / B 88(19), 195401 (2013) [10.1103/PhysRevB.88.195401]
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Simultaneous observations of convective gravity waves from a ground-based airglow imager and the AIRS satellite experiment
Journal of geophysical research / Atmospheres 118(8), 3178-3191 (2013) [10.1002/jgrd.50341]
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Crowd-Z: The user-friendly framework for crowd simulation on an architectural floor plan
Pattern recognition letters 39, S0167865513004170 (2013) [10.1016/j.patrec.2013.10.025]
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Increasing quality and managing complexity in neuroinformatics software development with continuous integration.
Frontiers in neuroinformatics 6(31), 1-16 (2013) [10.3389/fninf.2012.00031]
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