Software

Developed by SDL Biology

Protein Simulations

We are involved in two Open Source packages for Monte Carlo simulations of small proteins: SMMP and ProFASi (see also ProFASi Gallery).

Structure Prediction

Currently out of order!
In the past we provided three local structure prediction servers:

• DHPRED (Version 0.1)

  Prediction of dihedral angle regions from sequence

• BETTY (Version 0.1)

  Beta-sheet type prediction from sequence

• LOCUSTRA (Version 1.0)

  Prediction of local protein structure from sequence

Life Science software packages installed on the JSC supercomputers

A number of software packages that are interesting for biological simulations are already installed on our HPC sytems, e.g.,

• AMBER
• GROMACS
• NAMD

For an extended list of software packages and their availability on our systems check here.