Heat


Heat provides highly optimized algorithms and data structures for tensor computations using CPUs, GPUs and distributed cluster systems on top of MPI. Heat builds on PyTorch and mpi4py to provide high-performance computing infrastructure for memory-intensive applications within the NumPy/SciPy ecosystem, e.g. to run NumPy/SciPy code on GPUs (CUDA, ROCm, coming up: Apple MPS). Heat’s generic Python-first programming interface integrates seamlessly with the existing data science ecosystem and makes it as effortless as using NumPy to write scalable scientific and data science applications.

Figure taken from [1]: Distribution of a 3D array across three processes: (a), Array is not distributed, i.e., split=None, each process has access to the full data; split=0, split=1, and split=2: Array is distributed along axis 0, 1 or 2.
Figure taken from [1]: Distribution of a 3D array across three processes: (a), Array is not distributed, i.e., split=None, each process has access to the full data; split=0, split=1, and split=2: Array is distributed along axis 0, 1 or 2.


In addition, Heat offers deep learning tools specifically designed for HPC systems, including parallel data loading, in-memory data redistribution, parallelization strategies, and adjoint MPI operations to enable automatic differentiation across multiple HPC nodes.

More information

Website: https://heat.readthedocs.io/en/stable/

RSD: https://helmholtz.software/software/heat

GitHub: https://github.com/helmholtz-analytics/heat

References

[1] Götz, M., Debus, C., Coquelin, D., Krajsek, K., Comito, C., Knechtges, P., Hagemeier, B., Tarnawa, M., Hanselmann, S., Siggel, S., Basermann, A. & Streit, A. (2020). HeAT - a Distributed and GPU-accelerated Tensor Framework for Data Analytics. In 2020 IEEE International Conference on Big Data (Big Data) (pp. 276-287). IEEE, DOI: 10.1109/BigData50022.2020.9378050.

Our collaboration partners

ATML Data Management and Analytics@JSC

High-Performance Computing Department@DLR

Department Data Analytics, Access and Applications@KIT

SDL Neuroscience Contact(s)

  • Institute for Advanced Simulation (IAS)
  • Jülich Supercomputing Centre (JSC)
Building 16.3 /
Room 218
+49 2461/61-85277
E-Mail

SDL Neuroscience Team

Machine Learning and Data Analytics for Neuroimaging

Last Modified: 17.12.2024