Institute of Bio- and Geosciences (IBG)

Biotechnology (IBG-1)

Publications 2024

Proceedings Seiffarth, J.FZJ* ; Blöbaum, L. ; Paul, R. D.FZJ* ; Friederich, N. ; Yamachui Sitcheu, A. J. ; Mikut, R. ; Scharr, H.FZJ* ; Grünberger, A. ; Nöh, K.FZJ*
Tracking one-in-a-million: Large-scale benchmark for microbial single-cell tracking with experiment-aware robustnes metrics
2024BioImage Computing Workshop at the the 18th European Conference on Computer Vision ECCV 2024, MilanoMilano, Italy, 29 Sep 2024 - 4 Oct 20242024-09-292024-10-04 BibTeX | EndNote: XML, Text | RIS

Contribution to a book Macedo de Melo, E. ; Claassen, C. ; Finnigan, W. ; de Souza, R. ; Rother, D.FZJ*
Multi-enzyme catalysed processes in asymmetric synthesis: state-of-the-art and future trends
2024Biocatalysis in Asymmetric Synthesis Oxford : Gonzalo De Gonzalo, Andrés R. Alcántara : 1st, 301-402 (2024)2024 BibTeX | EndNote: XML, Text | RIS

Contribution to a book de Melo, E. M. ; Claassen, C. ; Finnigan, W. ; de Souza, R. O. M. A. ; Rother, D.FZJ*
Multienzyme-catalyzed processes in asymmetric synthesis: state of the art and future trends
2024Biocatalysis in Asymmetric Synthesis / de Melo, Eduardo Macedo ; : Elsevier, 2024, ; ISBN: 9780443190575 ; doi:10.1016/B978-0-443-19057-5.00012-1 UK : Elsevier 371-402 (2024) [10.1016/B978-0-443-19057-5.00012-1]2024 BibTeX | EndNote: XML, Text | RIS

Contribution to a conference proceedings/Contribution to a book Paul, R. D. (First author)FZJ* ; Seiffarth, J.FZJ* ; Scharr, H.FZJ* ; Nöh, K. (Corresponding author)FZJ*
Robust Approximate Characterization of Single-Cell Heterogeneity in Microbial Growth
20242024 IEEE International Symposium on Biomedical Imaging (ISBI), AthensAthens, Greece, 27 May 2024 - 30 May 20242024-05-272024-05-30 IEEE 1-5 (2024) [10.1109/ISBI56570.2024.10635267]2024 Files BibTeX | EndNote: XML, Text | RIS

Contribution to a conference proceedings/Contribution to a book Friederich, N. ; Yamachui Sitcheu, A. J. ; Nassal, A. ; Pesch, M.FZJ* ; Yildiz, E.FZJ* ; Beichter, M. ; Scholtes, L.FZJ* ; Akbaba, B. ; Lautenschlager, T. ; Neumann, O. ; Kohlheyer, D.FZJ* ; Scharr, H.FZJ* ; Seiffarth, J.FZJ* ; Nöh, K.FZJ* ; Mikut, R.
EAP4EMSIG - Experiment automation pipeline for event-driven microscopy to smart microfluidic single-cells analysis
202434. Workshop Computational Intelligence, BerlinBerlin, Germany, 21 Nov 2024 - 22 Nov 20242024-11-212024-11-22 Karlsruhe : KIT Scientific Publishing 169-192 p. (2024) [10.5445/KSP/1000174544]2024 BibTeX | EndNote: XML, Text | RIS

Book/Dissertation / PhD Thesis Wolf, N. (Corresponding author)FZJ*
Studies on the cAMP-responsive regulatory network of Corynebacterium glutamicum
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich Reihe Schlüsseltechnologien / Key Technologies 278, iii, 122 (2024) [10.34734/FZJ-2024-01257]2024 = Dissertation, Univ. Düsseldorf, 2023 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Book/Dissertation / PhD Thesis Zuchowski, R. (Corresponding author)FZJ*
Communities of Niche-optimized Strains (CoNoS) – a novel concept for improving biotechnological production
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich Reihe Schlüsseltechnologien / Key Technologies 280, VIII, 168 (2024) [10.34734/FZJ-2024-01956]2024 = Dissertation, Univ. Düsseldorf, 2023 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Book/Dissertation / PhD Thesis Ackermann, Y. (Corresponding author)FZJ*
Enabling mixed microbial upcycling of plastic monomers
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich Reihe Schlüsseltechnologien / Key Technologies 281, XVI, 203 (2024) [10.34734/FZJ-2024-02570]2024 = Dissertation, Univ. Düsseldorf, 2023 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Luthe, T.FZJ*
The role of cellular development in mulitcellular antiphage defenseof Streptomyces
171 pp. (2024)2024 = Dissertation, Heinrich-Heine University Düsseldorf, 2024 BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Helm, T.FZJ*
Exploring Alternative Feedstocks for the Production of Itaconic Acid with Ustilago spp.
130 p. (2024)2024 = Dissertation, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Book/Dissertation / PhD Thesis Luthe, T. (Corresponding author)FZJ*
The role of cellular development in multicellular antiphage defense of Streptomyces
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Schriften des Forschungszentrums Jülich Reihe Schlüsseltechnologien / Key Technologies 283, vi, 173 (2024) [10.34734/FZJ-2024-04896]2024 = Dissertation, Univ. Düsseldorf, 2023 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Book/Dissertation / PhD Thesis Erdrich, S. (Corresponding author)FZJ*
Understanding the dynamic of Plant-Bacteria-Bacteriophage interactions as a means to improve plant performance
Jülich : Forschungszentrum Jülich GmbH Zentralbibliothek, Verlag, Reihe Schlüsseltechnologien / Key Technologies 287, ix, 176 (2024) [10.34734/FZJ-2024-05219]2024 = Dissertation, Düsseldorf, 2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Steier, V. (Corresponding author)FZJ*
Optimization of natural and heterologous bacteriocin production via automated workflows
198 p. (2024)2024 = Dissertation, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Nießer, J.FZJ*
Automation, miniturization, and parallelization of isotopic labeling experiments for the advanced analysis of microbial systems
176 p. (2024)2024 = Dissertation, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Helleckes, L.FZJ*
Automated experimentation. Bayesian statistics and machine learning for high-throughput bioprocess development
224 p. (2024)2024 = Dissertation, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Mutz, M. (Corresponding author)FZJ*
Microbial production of aromatic compounds from renewable feedstocks
122 pp. (2024)2024 = Dissertation, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis de Witt, J.FZJ*
Biodegradation and microbial upcycling of plastics
259 pp. (2024)2024 = Dissertation, Heinrich-Heine University Düsseldorf, 2024 BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Ernst, P.FZJ*
Exploring the process window for production of itaconic, 2 hydroxyparaconic, and itatartaric acid with engineered Ustilago strains
259 pp. (2024)2024 = Dissertation, Heinrich-Heine University Düsseldorf, 2024 BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Rohr, K.FZJ*
Advancing bioprocess development for Filamentous fungi
129 p. (2024)2024 = Dissertation, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Dissertation / PhD Thesis Lechtenberg, T.FZJ*
Tolerance engineering of Pseudomonas for the efficient conversion and production of aldehydes
185 pp. (2024)2024 = Dissertation, Heinrich-Heine University Düsseldorf, 2024 BibTeX | EndNote: XML, Text | RIS

Journal Article Kruse, L.FZJ* ; Loeschcke, A.FZJ* ; de Witt, J.FZJ* ; Wierckx, N.FZJ* ; Jaeger, K.-E. (Corresponding author)FZJ* ; Thies, S.FZJ*
Halopseudomonas species: Cultivation and molecular genetic tools
Microbial biotechnology 17(1), e14369 (2024) [10.1111/1751-7915.14369]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article de Witt, J.FZJ* ; Molitor, R.FZJ* ; Gätgens, J.FZJ* ; Ortmann de Percin Northumberland, C.FZJ* ; Kruse, L.FZJ* ; Polen, T.FZJ* ; Wynands, B.FZJ* ; van Goethem, K. ; Thies, S.FZJ* ; Jaeger, K.-E.FZJ* ; Wierckx, N. (Corresponding author)FZJ*
Biodegradation of poly(ester‐urethane) coatings by Halopseudomonas formosensis
Microbial biotechnology 17(1), e14362 (2024) [10.1111/1751-7915.14362]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Ramin, E. (Corresponding author) ; Cardillo, A. G. ; Liebers, R. ; Schmölder, J.FZJ* ; von Lieres, E.FZJ* ; Van Molle, W. ; Niebel, B. ; Natalis, L. ; Meln, I. ; Perea-Vélez, M. ; Clénet, D. ; Jørgensen, J. B. ; Nilsson, B. ; Bracewell, D. G. ; Gernaey, K. V. (Corresponding author)
Accelerating vaccine manufacturing development through model-based approaches: current advances and future opportunities
Current opinion in chemical engineering 43, 100998 - (2024) [10.1016/j.coche.2023.100998]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Desiderato, C. K. ; Müller, C. ; Schretzmeier, A. ; Hasenauer, K. M. ; Gnannt, B. ; Süpple, B. ; Reiter, A. ; Steier, V. ; Oldiges, M.FZJ* ; Eikmanns, B. J. ; Riedel, C. U. (Corresponding author)
Optimized recombinant production of the bacteriocin garvicin Q by Corynebacterium glutamicum
Frontiers in microbiology 14, 1254882 (2024) [10.3389/fmicb.2023.1254882]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Mutz, M.FZJ* ; Brüning, V. ; Brüsseler, C. ; Müller, M.-F.FZJ* ; Noack, S.FZJ* ; Marienhagen, J. (Corresponding author)FZJ*
Metabolic engineering of Corynebacterium glutamicum for the production of anthranilate from glucose and xylose
Microbial biotechnology 17(1), e14388 (2024) [10.1111/1751-7915.14388]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Lechtenberg, T.FZJ* ; Wynands, B.FZJ* ; Wierckx, N. (Corresponding author)FZJ*
Engineering 5-hydroxymethylfurfural (HMF) oxidation in Pseudomonas boosts tolerance and accelerates 2,5-furandicarboxylic acid (FDCA) production
Metabolic engineering 81, 262 - 272 (2024) [10.1016/j.ymben.2023.12.010]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Zhang, W. ; Przybycien, T. ; Schmölder, J.FZJ* ; Leweke, S.FZJ* ; von Lieres, E. (Corresponding author)FZJ*
Solving crystallization/precipitation population balance models in CADET, part I: Nucleation growth and growth rate dispersion in batch and continuous modes on nonuniform grids
Computers & chemical engineering 183, 108612 - (2024) [10.1016/j.compchemeng.2024.108612]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Helm, T.FZJ* ; Stausberg, T. ; Previati, M. ; Ernst, P.FZJ* ; Klein, B.FZJ* ; Busche, T. ; Kalinowski, J. ; Wibberg, D.FZJ* ; Wiechert, W.FZJ* ; Claerhout, L. ; Wierckx, N.FZJ* ; Noack, S. (Corresponding author)FZJ*
Itaconate Production from Crude Substrates with U. maydis: Scale-up of an Industrially Relevant Bioprocess
Microbial cell factories 23(1), 29 (2024) [10.1186/s12934-024-02295-3]2024 DBCoverage Files BibTeX | EndNote: XML, Text | RIS

Journal Article Steier, V.FZJ* ; Prigolovkin, L.FZJ* ; Reiter, A. ; Neddermann, T. ; Wiechert, W.FZJ* ; Reich, S. J. ; Riedel, C. U. ; Oldiges, M. (Corresponding author)FZJ*
Automated workflow for characterization of bacteriocin production in natural producers Lactococcus lactis and Latilactobacillus sakei
Microbial cell factories 23(1), 74 (2024) [10.1186/s12934-024-02349-6]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article - Online First Reiter, A. ; Wesseling, L. ; Wiechert, W.FZJ* ; Oldiges, M. (Corresponding author)FZJ*
Rapid exometabolome footprinting combined with multivariate statistics: A powerful tool for bioprocess optimization
Engineering in life sciences 0, 2300222 (2024) [10.1002/elsc.202300222]2024 DBCoverage BibTeX | EndNote: XML, Text | RIS

Journal Article Ackermann, Y. S.FZJ* ; de Witt, J.FZJ* ; Mezzina, M. P. ; Schroth, C. ; Polen, T.FZJ* ; Nikel, P. I. ; Wynands, B.FZJ* ; Wierckx, N. (Corresponding author)FZJ*
Bio-upcycling of even and uneven medium-chain-length diols and dicarboxylates to polyhydroxyalkanoates using engineered Pseudomonas putida
Microbial cell factories 23(1), 54 (2024) [10.1186/s12934-024-02310-7]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Rothkranz, B.FZJ* ; Rieb, M. ; Unrau, E. L. ; Frindi-Wosch, I.FZJ* ; Hemmerich, J. ; Sehl, T.FZJ* ; Rother, D. (Corresponding author)FZJ*
High Cell Density Cultivation Combined with high Specific Enzyme Activity: Cultivation Protocol for the Production of an Amine Transaminase from Bacillus megaterium in E. coli
ChemBioChem 25(9), e202400006 (2024) [10.1002/cbic.202400006]2024 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Yoshida, K.-i. ; Bott, M.FZJ*
Microbial synthesis of health-promoting inositols
Current opinion in biotechnology 87, 103114 - (2024) [10.1016/j.copbio.2024.103114]2024 Embargoed OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Seiffarth, J.FZJ* ; Scherr, T. ; Wollenhaupt, B.FZJ* ; Neumann, O. ; Scharr, H.FZJ* ; Kohlheyer, D.FZJ* ; Mikut, R. ; Nöh, K. (Corresponding author)FZJ*
ObiWan-Microbi: OMERO-based integrated workflow for annotating microbes in the cloud
SoftwareX 26, 101638 - (2024) [10.1016/j.softx.2024.101638]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Milke, L. ; Kabuu, M.FZJ* ; Zschoche, R. ; Gätgens, J.FZJ* ; Krumbach, K.FZJ* ; Carlstedt, K.-L. ; Wurzbacher, C. E. ; Balluff, S. ; Beemelmanns, C. ; Jogler, C. ; Marienhagen, J.FZJ* ; Kallscheuer, N. (Corresponding author)
A type III polyketide synthase cluster in the phylum Planctomycetota is involved in alkylresorcinol biosynthesis
Applied microbiology and biotechnology 108(1), 239 (2024) [10.1007/s00253-024-13065-x]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Mardoukhi, M. S. Y. ; Rapp, J. ; Irisarri, I. ; Gunka, K. ; Link, H. ; Marienhagen, J.FZJ* ; de Vries, J. ; Stülke, J. ; Commichau, F. M.
Metabolic rewiring enables ammonium assimilation via a non‐canonical fumarate‐based pathway
Microbial biotechnology 17(3), e14429 (2024) [10.1111/1751-7915.14429]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Ravagnan, G. ; Lesemann, J. ; Müller, M.-F.FZJ* ; Poehlein, A. ; Daniel, R. ; Noack, S.FZJ* ; Kabisch, J. ; Schmid, J. (Corresponding author)
Genome reduction in Paenibacillus polymyxa DSM 365 for chassis development
Frontiers in Bioengineering and Biotechnology 12, 1378873 (2024) [10.3389/fbioe.2024.1378873]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Zuchowski, R.FZJ* ; Schito, S.FZJ* ; Noack, S.FZJ* ; Baumgart, M. (Corresponding author)FZJ*
CoNoS: synthetische Ko-Kulturen für Grundlagenforschung und Anwendung
Biospektrum 30(2), 224 - 226 (2024) [10.1007/s12268-024-2135-8]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Helleckes, L. M.FZJ* ; Küsters, K. ; Wagner, C.FZJ* ; Hamel, R.FZJ* ; Saborowski, R. ; Marienhagen, J.FZJ* ; Wiechert, W.FZJ* ; Oldiges, M. (Corresponding author)FZJ*
“High-throughput screening of catalytically active inclusion bodies using laboratory automation and Bayesian optimization”
Microbial cell factories 23(1), 67 (2024) [10.1186/s12934-024-02319-y]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Theorell, A. (Corresponding author)FZJ* ; Jadebeck, J. F.FZJ* ; Wiechert, W.FZJ* ; McFadden, J. ; Nöh, K. (Corresponding author)FZJ*
Rethinking 13C-Metabolic flux analysis – The bayesian way of flux inference
Metabolic engineering 83, 137-149 (2024) [10.1016/j.ymben.2024.03.005]2024 Embargoed OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Rohr, K.FZJ* ; Gremm, L. ; Geinitz, B.FZJ* ; Jourdier, E. ; Wiechert, W.FZJ* ; Ben Chaabane, F. ; Oldiges, M. (Corresponding author)FZJ*
Optimizing microbioreactor cultivation strategies for Trichoderma reesei: from batch to fed-batch operations
Microbial cell factories 23(1), 112 (2024) [10.1186/s12934-024-02371-8]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Orsi, E. ; Schada von Borzyskowski, L. ; Noack, S.FZJ* ; Nikel, P. I. ; Lindner, S. N. (Corresponding author)
Automated in vivo enzyme engineering accelerates biocatalyst optimization
Nature Communications 15(1), 3447 (2024) [10.1038/s41467-024-46574-4]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Amariei, D.-A. ; Haase, M. ; Klischan, M. ; Wäscher, M. ; Pietruszka, J. (Corresponding author)FZJ*
High‐Throughput Colorimetric Detection and Quantification of Indoles and Pyrroloindoles for Enzymatic Activity Determination
ChemCatChem 16(11), e202400052 (2024) [10.1002/cctc.202400052]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Boros, K. ; Gal, L. ; Gal, C. A. ; Wäscher, M. ; Tomoiagă, R. B. ; Toşa, M. I. ; Pietruszka, J.FZJ* ; Bencze, L. C. (Corresponding author)
Immobilization of D-amino acid dehydrogenase from Ureibacillus thermosphaericus
Process biochemistry 140, 45 - 55 (2024) [10.1016/j.procbio.2024.02.014]2024 BibTeX | EndNote: XML, Text | RIS

Journal Article Myllek, S. ; Pietruszka, J. (Corresponding author)FZJ*
Jahresrückblick Organische Chemie: Naturstoff(total)synthese
Nachr. Chem. Tech. Lab. 140, 45-55 (2024)2024 BibTeX | EndNote: XML, Text | RIS

Journal Article Paul, R. D.FZJ* ; Jadebeck, J. F.FZJ* ; Stratmann, A.FZJ* ; Wiechert, W.FZJ* ; Nöh, K. (Corresponding author)FZJ*
hopsy - a methods marketplace for convex polytope sampling in Python
Bioinformatics 40(7), 1-5 (2024) [10.1093/bioinformatics/btae430]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Ernst, P.FZJ* ; Wirtz, A. ; Wynands, B.FZJ* ; Wierckx, N. (Corresponding author)FZJ*
Establishing an itaconic acid production process with Ustilago species on the low-cost substrate starch
FEMS yeast research 24, foae023 (2024) [10.1093/femsyr/foae023]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Rosch, T. M.FZJ* ; Tenhaef, J.FZJ* ; Stoltmann, T. ; Redeker, T.FZJ* ; Kösters, D.FZJ* ; Hollmann, N.FZJ* ; Krumbach, K.FZJ* ; Wiechert, W.FZJ* ; Bott, M.FZJ* ; Matamouros, S.FZJ* ; Marienhagen, J.FZJ* ; Noack, S. (Corresponding author)FZJ*
AutoBioTech─A Versatile Biofoundry for Automated Strain Engineering
ACS synthetic biology 13(7), 2227 - 2237 (2024) [10.1021/acssynbio.4c00298]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Fehsel, K. (Corresponding author) ; Bouvier, M.-L. ; Capobianco, L. ; Lunetti, P. ; Klein, B.FZJ* ; Oldiges, M.FZJ* ; Majora, M. ; Löffler, S.
Neuroreceptor Inhibition by Clozapine Triggers Mitohormesis and Metabolic Reprogramming in Human Blood Cells
Cells 13(9), 762 - (2024) [10.3390/cells13090762]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Kever, L.FZJ* ; Zhang, Q. ; Hardy, A. ; Westhoff, P. ; Yu, Y. ; Frunzke, J. (Corresponding author)FZJ*
Resistance against aminoglycoside antibiotics via drug or target modification enables community-wide antiphage defense
Microlife 5, uqae015 (2024) [10.1093/femsml/uqae015]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Steier, V.FZJ* ; Osthege, M.FZJ* ; Helleckes, L. M.FZJ* ; Siska, M.FZJ* ; von Lieres, E.FZJ* ; Wiechert, W.FZJ* ; Reich, S. J. ; Riedel, C. U. ; Oldiges, M. (Corresponding author)FZJ*
Quantification of nisin concentration from fluorescence‐based antimicrobial activity assay using Bayesian calibration
Biotechnology progress 40(6), e3495 (2024) [10.1002/btpr.3495]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Köbbing, S. (Corresponding author) ; Lechtenberg, T.FZJ* ; Wynands, B.FZJ* ; Blank, L. M. ; Wierckx, N.FZJ*
Reliable Genomic Integration Sites in Pseudomonas putida Identified by Two-Dimensional Transcriptome Analysis
ACS synthetic biology 13(7), 2060 - 2072 (2024) [10.1021/acssynbio.3c00747]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Frunzke, J. (Corresponding author)FZJ* ; Lavigne, R.
Editorial overview: There and back again: a phage’s tale
Current opinion in microbiology 80, 102518 - (2024) [10.1016/j.mib.2024.102518]2024 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Helleckes, L. M.FZJ* ; Wirnsperger, C. ; Polak, J. ; Guillén-Gosálbez, G. ; Butté, A. ; von Stosch, M. (Corresponding author)
Novel calibration design improves knowledge transfer across products for the characterization of pharmaceutical bioprocesses
Biotechnology journal 19(7), 2400080 (2024) [10.1002/biot.202400080]2024 Embargoed OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Erdrich, S. H.FZJ* ; Schurr, U.FZJ* ; Frunzke, J.FZJ* ; Arsova, B. (Corresponding author)FZJ*
Seed coating with phages for sustainable plant biocontrol of plant pathogens and influence of the seed coat mucilage
Microbial biotechnology 17(6), e14507 (2024) [10.1111/1751-7915.14507]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Lechtenberg, T.FZJ* ; Wynands, B.FZJ* ; Müller, M.-F.FZJ* ; Polen, T.FZJ* ; Noack, S.FZJ* ; Wierckx, N. (Corresponding author)FZJ*
Improving 5-(hydroxymethyl)furfural (HMF) tolerance of Pseudomonas taiwanensis VLB120 by automated adaptive laboratory evolution (ALE)
Metabolic engineering communications 18, e00235 - (2024) [10.1016/j.mec.2024.e00235]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article - Online First Rönitz, J.FZJ* ; Herrmann, F.FZJ* ; Wynands, B.FZJ* ; Polen, T.FZJ* ; Wierckx, N.FZJ*
SIGHT—A System for Solvent‐Tight Incubation and Growth Monitoring in High Throughput
Engineering in life sciences 0, e202400037 (2024) [10.1002/elsc.202400037]2024 DBCoverage BibTeX | EndNote: XML, Text | RIS

Journal Article de Witt, J.FZJ* ; Ostheller, M.-E. ; Jensen, K. ; Polen, T.FZJ* ; Seide, G. ; Thies, S.FZJ* ; Wierckx, N. (Corresponding author)FZJ*
Increasing the diversity of nylonases for poly(ester amide) degradation
Green chemistry 26(18), 9911 - 9922 (2024) [10.1039/D4GC01662A]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Klos, N.FZJ* ; Osterthun, O. ; Mengers, H. ; Lanzerath, P. ; Westarp, W. G. v. ; Lim, G. ; Gausmann, M. ; Küsters-Spöring, J.-D. ; Wiesenthal, J. ; Guntermann, N. ; Lauterbach, L. ; Jupke, A.FZJ* ; Leitner, W. ; Blank, L. ; Klankermayer, J. ; Rother, D. (Corresponding author)FZJ*
Concatenating microbial, enzymatic, and organometallic catalysis for integrated conversion of renewable carbon sources
JACS Au 4(12), 4546–4570 (2024) [10.1021/jacsau.4c00511]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Ernst, P.FZJ* ; Saur, K. M. ; Kiefel, R. ; Niehoff, P.-J. ; Weskott, R.FZJ* ; Büchs, J. ; Jupke, A.FZJ* ; Wierckx, N. (Corresponding author)FZJ*
Balancing pH and yield: exploring itaconic acid production in Ustilago cynodontis from an economic perspective
Biotechnology for biofuels and bioproducts 17(1), 103 (2024) [10.1186/s13068-024-02550-0]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article - Online First Witting, L.FZJ* ; Seiffarth, J. ; Stute, B.FZJ* ; Schulze, T. ; Hofer, J. M. ; Nöh, K.FZJ* ; Eisenhut, M. ; Weber, A. P. M. ; von Lieres, E.FZJ* ; Kohlheyer, D. (Corresponding author)FZJ*
A microfluidic system for the cultivation of cyanobacteria with precise light intensity and CO 2 control: enabling growth data acquisition at single-cell resolution
Lab on a chip 0, 10.1039.D4LC00567H (2024) [10.1039/D4LC00567H]2024 BibTeX | EndNote: XML, Text | RIS

Journal Article Amariei, D. A.FZJ* ; Tenhaef, J.FZJ* ; Classen, T.FZJ* ; David, B.FZJ* ; Rosch, T. M.FZJ* ; Gohlke, H.FZJ* ; Noack, S.FZJ* ; Pietruszka, J. (Corresponding author)
Directed evolution of C-methyltransferase PsmD for enantioselective pyrroloindole derivative production
Catalysis science & technology 14(21), 6298 - 6306 (2024) [10.1039/D4CY00657G]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Ölçücü, G.FZJ* ; Wollenhaupt, B. ; Kohlheyer, D.FZJ* ; Jaeger, K.-E.FZJ* ; Krauss, U. (Corresponding author)FZJ*
Magnetic protein aggregates generated by supramolecular assembly of ferritin cages - a modular strategy for the immobilization of enzymes
Frontiers in Bioengineering and Biotechnology 12, 1478198 (2024) [10.3389/fbioe.2024.1478198]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Lim, G. ; Calabrese, D. ; Wolder, A. ; Cordero, P. R. F. ; Rother, D.FZJ* ; Mulks, F. F. ; Paul, C. E. ; Lauterbach, L. (Corresponding author)
H2-driven biocatalysis for flavin-dependent ene-reduction in a continuous closed-loop flow system utilizing H2 from water electrolysis
Communications chemistry 7(1), 200 (2024) [10.1038/s42004-024-01288-y]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Karmainski, T. ; Lipa, M. K. ; Kubicki, S.FZJ* ; Bouchenafa, A.FZJ* ; Thies, S.FZJ* ; Jaeger, K.-E.FZJ* ; Blank, L. M. (Corresponding author) ; Tiso, T.
Optimized Feeding Strategies for Biosurfactant Production from Acetate by Alcanivorax borkumensis SK2
Fermentation 10(5), 1 (2024) [10.3390/fermentation10050257]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Krüger, A.FZJ* ; Göddecke, J. ; Osthege, M.FZJ* ; Navratil, L. ; Weber, U.FZJ* ; Oldiges, M.FZJ* ; Frunzke, J. (Corresponding author)FZJ*
Biosensor-based growth-coupling as an evolutionary strategy to improve heme export in Corynebacterium glutamicum
Microbial cell factories 23(1), 276 (2024) [10.1186/s12934-024-02556-1]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Trávníková, V. ; Wolff, D. ; Dirkes, N. ; Elgeti, S. ; von Lieres, E.FZJ* ; Behr, M.
A model hierarchy for predicting the flow in stirred tanks with physics-informed neural networks
Advances in Ceramic Science and Engineering 2(2), 91 - 129 (2024) [10.3934/acse.2024007]2024 BibTeX | EndNote: XML, Text | RIS

Journal Article Nießer, J.FZJ* ; Osthege, M.FZJ* ; von Lieres, E.FZJ* ; Wiechert, W.FZJ* ; Noack, S.FZJ*
PeakPerformance - A tool for Bayesian inference-based fitting of LC-MS/MS peaks
The journal of open source software 9(104), 7313 - (2024) [10.21105/joss.07313]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Erdrich, S. H.FZJ* ; Luthe, T.FZJ* ; Kever, L.FZJ* ; Badia Roigé, B.FZJ* ; Arsova, B.FZJ* ; Davoudi, E.FZJ* ; Frunzke, J.FZJ*
Expanding the Phage Galaxy: Isolation and Characterization of Five Novel Streptomyces Siphoviruses Ankus, Byblos, DekoNeimoidia, Mandalore, and Naboo
PHAGE 5(3), (2024) [10.1089/phage.2024.0012]2024 Files BibTeX | EndNote: XML, Text | RIS

Journal Article Fritzsche, S. ; Hübner, H. ; Oldiges, M.FZJ* ; Castiglione, K. (Corresponding author)
Comparative evaluation of the extracellular production of a polyethylene terephthalate degrading cutinase by Corynebacterium glutamicum and leaky Escherichia coli in batch and fed-batch processes
Microbial cell factories 23(1), 274 (2024) [10.1186/s12934-024-02547-2]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Mostafa, F. ; Krüger, A.FZJ* ; Nies, T. ; Frunzke, J.FZJ* ; Schipper, K. ; Matuszyńska, A.
Microbial markets: socio-economic perspective in studying microbial communities
Microlife 5, uqae016 (2024) [10.1093/femsml/uqae016]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Favoino, G. ; Krink, N. ; Schwanemann, T. ; Wierckx, N.FZJ* ; Nikel, P. I. (Corresponding author)
Enhanced biosynthesis of poly(3‐hydroxybutyrate) in engineered strains of Pseudomonas putida via increased malonyl‐ CoA availability
Microbial biotechnology 17(11), e70044 (2024) [10.1111/1751-7915.70044]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Malzacher, S. ; Meißner, D. ; Range, J. ; Findrik Blažević, Z. ; Rosenthal, K. ; Woodley, J. M. ; Wohlgemuth, R. ; Wied, P. ; Nidetzky, B. ; Giessmann, R. T. ; Prakinee, K. ; Chaiyen, P. ; Bommarius, A. S. ; Rohwer, J. M. ; de Souza, R. O. M. A. ; Halling, P. J. ; Pleiss, J. ; Kettner, C. ; Rother, D. (Corresponding author)FZJ*
The STRENDA Biocatalysis Guidelines for cataloguing metadata
Nature catalysis 7(12), 1245 - 1249 (2024) [10.1038/s41929-024-01261-x]2024 BibTeX | EndNote: XML, Text | RIS

Journal Article Frandsen, J. ; Breuer, J. M. ; von Lieres, E.FZJ* ; Schmölder, J.FZJ* ; Huusom, J. K. ; Gernaey, K. V. ; Abildskov, J.
Discontinuous Galerkin spectral element method for continuous chromatography: Application to the Lumped Rate Model without pores
Compuer aided chemical engineering 53, 3325-3330 (2024) [10.1016/B978-0-443-28824-1.50555-X]2024 BibTeX | EndNote: XML, Text | RIS

Journal Article Ernst, P.FZJ* ; Zlati, F.FZJ* ; Kever, L.FZJ* ; Wirtz, A.FZJ* ; Goldbaum, R.FZJ* ; Pietruszka, J.FZJ* ; Wynands, B.FZJ* ; Frunzke, J.FZJ* ; Wierckx, N.FZJ*
Selective production of the itaconic acid-derived compounds 2-hydroxyparaconic and itatartaric acid
Metabolic engineering communications 19, e00252 - (2024) [10.1016/j.mec.2024.e00252]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Journal Article Bertoldi, S. (Corresponding author) ; Mattos, P. D. M. A. S. ; de Carvalho, C. C. C. R. ; Kruse, L.FZJ* ; Thies, S.FZJ* ; Heipieper, H. J. ; Eberlein, C.
Evaluation of the Robustness Under Alkanol Stress and Adaptability of Members of the New Genus Halopseudomonas
Microorganisms 12(11), 2116 - (2024) [10.3390/microorganisms12112116]2024 OpenAccess Files BibTeX | EndNote: XML, Text | RIS

Master Thesis Brodda, B.FZJ*
Bayesian analysis of epidemiologic models with application to SARS-CoV-2 in Germany
Jülich 60 p. (2024)2024 = Masterarbeit, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Neumann, A.FZJ*
Development of automated workflows for the screening of a secretion strain library and bioprocess development for adhesion-promoting peptide MacHis
82 p. (2024)2024 = Masterarbeit, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Quadflieg, E.FZJ*
Optimierung der intrazellulären Synthese und Sekretion von bifunktionalen Ankerproteinen in Escherichia coli und Corynebacterium glutamicum
84 p. (2024)2024 = Bachelorarbeit, FH Aachen, Campus Jülich, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Wachtendonk, L.FZJ*
Enabling Synergy: Miniaturized and Automated Cell Disruption of E. coli for High-Throughput Proteome Profiling
101 p. (2024)2024 = Masterarbeit, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Osswald, L.FZJ*
Development of a versatile CRISPRi-System for automated strain engineering of the platform organisms E. coli and C. glutamicum
70 p. (2024)2024 = Masterarbeit, Universität Bonn, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Wellfonder, M.
Optimization and scale-up of an enzymatic diol synthesis
77 p. (2024)2024 = Masterarbeit, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Hoppe, M.FZJ*
Investigation of carboxylic acid reductases & carboligases for upgrading formic acid
143 p. (2024)2024 = Masterarbeit, FH Aachen, Campus Jülich, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Doser, M.FZJ*
From molasses to a-ketoglutarate: Development of a Corynebacterium glutamicum based production process
90 p. (2024)2024 = Masterarbeit, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Schwartz, K. (Corresponding author)FZJ*
Scaled down robustness analysis for the production of peroxidase under the PDF promoter in Komagataella phaffii
62 p. (2024)2024 = Bachelorarbeit, FH Aachen, Campus Jülich, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Dolfen, N.FZJ*
Nutrient Provision for Bacterial Co-Cultures in Single-Cell Analysis Using Hydrogels
150 p. (2024)2024 = Masterarbeit, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Sander, J.
Production of the bacteriocin lysostaphin in Corynebacterium glutamicum: Strain construction and bioprocess optimization using automated workflows
173 p. (2024)2024 = Masterarbeit, TU Berlin, 2024 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Traving, H.
Enzymatic production of meso-5,6-decanediol and (5R,6R)-decanediol
126 p. (2024)2024 = Bachelorarbeit, RWTH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Hahn, D.FZJ*
Influence of reaction components on the cofactor pyridoxal-5'-phosphate using the example of amine transaminase from Chromobacterium violaceum
75 p. (2024)2024 = Bachelorarbeit, Johannes Gutenberg Universität, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Celen, S.FZJ*
Development of Streptomyces venezuelae and Escherichia coli TXTL systems for the in vitro production of bacteriophages – enabling the screening of antiphage compounds
103 pp. (2024)2024 = Masterarbeit, Ruhr-Universität Bochum, 2024 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Navratil, L.
Evolutionary engineering of enhanced heme export of Corynebacterium glutamicum using a growth-coupled biosensor strategy
47 pp. (2024)2024 = Bachelorarbeit, Heinrich-Heine University Düsseldorf, 2024 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Vanselow, J.FZJ*
Cloning and inducible expression of pyranose 2-oxidase and xylose reductase genes for biotransformation of D-glucoseusing Gluconobacter oxydans
80 pp. (2024)2024 = Bachelorarbeit, FH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Mertens, K.
Recombinant work and strain construction for constitutive production of dsRNAs in Corynebacterium glutamicum
59 pp. (2024)2024 = Bachelorarbeit, FH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Engelbert, S.
Analysis of counter-selection strategies and gene deletions in Vibrio natriegens and of induced cell lysis in a recombinant Corynebacterium glutamicum strain
60 pp. (2024)2024 = Bachelorarbeit, FH Aachen, 2024 BibTeX | EndNote: XML, Text | RIS

Bachelor Thesis Federer, E.
Untersuchungen zur Etablierung lichtgesteuerter regulierter Genexpression im Essigsäurebakterium Gluconobacter oxydans mit dem L-Arabinose induzierbaren AraC-ParaBAD-System aus E. coli
59 pp. (2024)2024 = Bachelorarbeit, HS Ansbach, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Khan, M.
Investigations into the establishment of light-controlled regulated gene expression in acetic acid bacteria Gluconobacter oxydans
64 pp. (2024)2024 = Masterarbeit, HS Offenburg, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Jäger, A.FZJ*
Evolutionary engineering of Geobacillus thermoleovorans to degrade PBAT in a consolidated bioprocessing approach
66 pp. (2024)2024 = Masterarbeit, Heinrich-Heine University, 2024 BibTeX | EndNote: XML, Text | RIS

Master Thesis Müller
Optimizing enzymatic and microbial degradation of poly(lactic acid) under thermophilic conditions
90 pp. (2024)2024 = Masterarbeit, Heinrich-Heine University, 2024 BibTeX | EndNote: XML, Text | RIS

Last Modified: 12.04.2024