Institute of Biological Information Processing (IBI)

Structural Biochemistry (IBI-7)

Publications 2010

Bartnik, D. ; Funke, S. A. ; Andrei-Selmer, L. C. ; Bacher, M. ; Dodel, R. ; Willbold, D.
Differently Selected D-Enantiomeric Peptides Act on Different A beta Species
Rejuvenation research 13, (2010) [10.1089/rej.2009.0924]2010 BibTeX | EndNote: XML, Text | RIS

Batra-Safferling, R. ; Granzin, J. ; Moedder, S. ; Hoffmann, S. ; Willbold, D.
Structural studies of PI3K SH3 domain in complex with a peptide ligand: role of anchor residue in ligand binding
Biological chemistry 391, 33 - 42 (2010) [10.1515/bc.2010.003]2010 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Borshchevskiy, V. ; Moiseeva, E. ; Kuklin, A. ; Büldt, G. ; Hato, M. ; Gordeliy, V. I.
Isoprenoid-chained lipid ß-XylOC16+4—A novel molecule for in meso membrane protein crystallization
Journal of crystal growth 312, 3326 - 3330 (2010) [10.1016/j.jcrysgro.2010.08.018]2010 BibTeX | EndNote: XML, Text | RIS

Borshchevskiy, V. ; Efremov, R. ; Moiseeva, E. ; Büldt, G. ; Gordeliy, V. I.
Overcoming merohedral twinning in crystals of bacteriorhodopsin grown in lipidic mesophase
Acta crystallographica / D 66, 26 - 32 (2010) [10.1107/S0907444909042838]2010 BibTeX | EndNote: XML, Text | RIS

Bulavin, L. A. ; Gordeliy, V. I. ; Ivan'kov, O. I. ; Islamov, A. Kh: ; Kuklin, A. I.
Neutron studies of the NaBr impurity influence on micelle formation in the heay water-tetradecyltrimethylammonium bromide systems
Ukrainian journal of physics 55, 288 - 292 (2010)2010 BibTeX | EndNote: XML, Text | RIS

Chuprov-Netochin, R. N. ; Faizullina, N. M. ; Sykilinda, N. N. ; Simakova, M. N. ; Mesyanzhinov, V. V. ; Miroshnikov, K. A.
The beta-helical domain of bacteriophage T4 controls the folding of the fragment of long tail fibers in a chimeric protein
Russian journal of bioorganic chemistry 36, 193 - 199 (2010) [10.1134/S1068162010020056]2010 BibTeX | EndNote: XML, Text | RIS

Dutta, A. ; Tirupula, K. C. ; Alexiev, U. ; Klein-Seetharaman, J.
Characterization of membrane protein non-native states. 1. Extent of unfolding and aggregation of rhodopsin in the presence of chemical denaturants
Biochemistry 49, 6317 - 6328 (2010) [10.1021/bi100338e]2010 BibTeX | EndNote: XML, Text | RIS

Funke, S. A. ; Wang, L. ; Birkmann, E. ; Willbold, D.
Single-particle detection system for Abeta aggregates: adaptation of surface-fluorescence intensity distribution analysis to laser scanning microscopy
Rejuvenation research 13, (2010)2010 BibTeX | EndNote: XML, Text | RIS

Funke, S. A. ; van Groen, T. ; Kadish, I. ; Bartnik, D. ; Nagel-Steger, L. ; Brener, O. ; Sehl, T. ; Batra-Safferling, R. ; Moriscot, C. ; Schoehn, G. ; Horn, A. H. C. ; Müller-Schiffmann, A. ; Korth, C. ; Sticht, H. ; Willbold, D.
Oral Treatment with the D-Enantiomeric Peptide D3 Improves Pathology and Behavior of Alzheimers disease Transgenic Mice
ACS chemical neuroscience 1, 639 - 648 (2010) [10.1021/cn100057j]2010 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Galkin, V. E. ; Orlova, A. ; Schröder, G. F. ; Egelmann, E. H.
Structural polymorphism in F-actin
Nature structural & molecular biology 17, 1318 - 1323 (2010) [10.1038/nsmb.1930]2010 BibTeX | EndNote: XML, Text | RIS

Glück, J. M. ; Hoffmann, S. ; Koenig, B. W. ; Willbold, D.
Single vector system of efficient N-myristoylation of recombinant proteins in E.coli
PLoS one 5(4), e10081 (2010) [10.1371/journal.pone.0010081]2010 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Hoffmann, S. ; Funke, S. A. ; Wiesehan, K. ; Moedder, S. ; Glück, J. M. ; Feuerstein, S. E. ; Gerdts, J. ; Moetter, J. ; Willbold, D.
Competitively selected protein ligands pay their increase in specificity by a decrease in affinity
Molecular BioSystems 6, 126 - 133 (2010) [10.1039/b910945e]2010 BibTeX | EndNote: XML, Text | RIS

Jasnin, M. ; Stadler, A. ; Tehei, M. ; Zaccai, G.
Specific cellular water dynamics observed in vivo by neutron scattering and NMR
Physical Chemistry Chemical Physics 12, 10154 - 10160 (2010) [10.1039/c0cp01048k]2010 BibTeX | EndNote: XML, Text | RIS

Kagan, V. E. ; Konduru, N. V. ; Feng, W. ; Allen, B. L. ; Conroy, J. ; Volkov, Y. ; Vlasova, I. I. ; Belikova, N. A. ; Yanamala, N. ; Apralov, A. ; Tyurina, Y. Y. ; Kisin, E. R. ; Murray, A. R. ; Franks, J. ; Stolz, D. ; Gou, P. ; Shi, J. ; Klein-Seetharaman, J. ; Fadeel, B. ; Star, A. ; Shvedova, A.
Carbon nanotubes degraded by neutrophil myeloperoxidase induce less pulmonary inflammation
Nature nanotechnology 5, 354 - 359 (2010) [10.1038/nnano.2010.44]2010 BibTeX | EndNote: XML, Text | RIS

Kumar, A. ; Heise, H. ; Blommers, M. J. J. ; Krastel, P. ; Schmitt, E. ; Petersen, F. ; Mandelkow, E. M. ; Carlomagno, T. ; Griesinger, C. ; Baldus, M.
Interaction of Epothilone B (Patupilone) with Microtubules, As Detected by Two-Dimensional Solid-State NMR Spectroscopy
2010. Angewandte Chemie / International edition 49, 7504-7507 (2010) [10.1002/anie.201001946]2010 BibTeX | EndNote: XML, Text | RIS

Kumari, A. ; Rosenkranz, T. ; Kayastha, A. M. ; Fitter, J.
The effect of calcium binding on the unfolding barrier: A kinetic study on homologous a-amylases
Biophysical chemistry 151, (2010) [10.1016/j.bpc.2010.05.005]2010 BibTeX | EndNote: XML, Text | RIS

Liu, H. ; Funke, S. A. ; Willbold, D.
Transport of Alzheimer disease amyloid-beta-binding D-amino acid peptides across an in vitro blood-brain barrier model
Rejuvenation research 13, (2010) [10.1089/rej.2009.0926]2010 BibTeX | EndNote: XML, Text | RIS

Lüers, L. ; Panza, G. ; Henke, F. ; Aygenim, T. ; Weiß, J. ; Willbold, D. ; Birkmann, E.
Amyloid formation: Age-related mechanism in Creutzfeldt-Jakob disease?
Rejuvenation research 13, (2010) [10.1089/rej.2009.0932]2010 BibTeX | EndNote: XML, Text | RIS

Ma, P. ; Mohrlüder, J. ; Schwarten, M. ; Stoldt, M. ; Singh, S. K. ; Hartmann, R. ; Pacheco, V. ; Willbold, D.
Preparation of a Functional GABARAP-Lipid-Conjugate in Nanodiscs and its Investigation by Solution NMR Spectroscopy
ChemBioChem 11, 1967 - 1970 (2010) [10.1002/cbic.201000354]2010 BibTeX | EndNote: XML, Text | RIS

Moetter, J. ; Hoffmann, S. ; Jonas, E. ; Willbold, D. (Corresponding Author)
Potential role of HIV-1 Nef and human M6B in HIV-associated neurological disorders
201016th International Symposium on HIV and Emerging Infectious Diseases, MarseilleMarseille, France, 24 Mar 2010 - 26 Mar 20102010-03-242010-03-26 Retrovirology 7(Suppl 1), P18 - (2010) [10.1186/1742-4690-7-S1-P18]2010 Files Fulltext Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Müller-Schiffmann, A. ; März-Berberich, J. ; Andrjevna, A. ; Rönicke, R. ; Bartnik, D. ; Brener, O. ; Kutzsche, J. ; Horn, A. H. C. ; Hellmert, M. ; Gottmann, K. ; Reymann, K. ; Funke, S. A. ; Nagel-Steger, L. ; Moriscot, C. ; Schoehn, G. ; Sticht, H. ; Willbold, D. ; Schrader, T. ; Korth, C.
Combining independent drug classes into superior, synergistically acting hybrid molecules
2010Angewandte Chemie International Edition English Angewandte Chemie / International edition 49, 8743 - 8746 (2010) [10.1002/anie.201004437]2010 BibTeX | EndNote: XML, Text | RIS

Nagel-Steger, L. ; Demeler, B. ; Meyer-Zaika, W. ; Hochdörffer, K. ; Schrader, T. ; Willbold, D.
Modulation of aggregate size- and shape-distributions of the amyloid-bets peptide by a designed beta-sheet breaker
European biophysics journal 39, 415 - 422 (2010) [10.1007/s00249-009-0416-2]2010 BibTeX | EndNote: XML, Text | RIS

Pacheco, V. ; Ma, P. ; Thielmann, Y. ; Hartmann, R. ; Weiergräber, O. H. ; Mohrlüder, J. ; Willbold, D.
Assessment of GABARAP self-association by its diffusion properties
Journal of biomolecular NMR 48, 49 - 58 (2010) [10.1007/s10858-010-9437-5]2010 BibTeX | EndNote: XML, Text | RIS

Panza, G. ; Dumpitak, C. ; Birkmann, E.
Influence of the Maillard Reaction to Prion Protein Aggregation
Rejuvenation research 13, (2010) [10.1089/rej.2009.0954]2010 BibTeX | EndNote: XML, Text | RIS

Panza, G. ; Luers, L. ; Stöhr, J. ; Nagel-Steger, L. ; Weiß, J. ; Riesner, D. ; Willbold, D. ; Birkmann, E.
Molecular interactions between prions as seeds and recombinant prion proteins as substrates resemble the biological interspecies barrier in vitro
PLoS one 5, e14283 (2010) [10.1371/journal.pone.0014283]2010 Files Fulltext by Pubmed Central Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Qi, Y. ; Tastan, O. ; Carbonell, J. G. ; Klein-Seetharaman, J. ; Weston, J.
Semi-Supervised Multi-Task Learning for Predicting Interactions between HIV-1 and Human Proteins
Bioinformatics 26, 1645 - 1652 (2010) [10.1093/bioinformatics/btq394]2010 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Radu, I. ; Budyak, I. L. ; Hoomann, T. ; Kim, Y. J. ; Engelhard, M. ; Labahn, J. ; Büldt, G. ; Heberle, J. ; Schlesinger, R.
Signal relay from sensory rhodopsin I to the cognate transducer HtrI: assessing the critical change in hydrogen-bonding between Tyr-210 and Asn-53
Biophysical chemistry 150(1-3), 23-28 (2010)2010 BibTeX | EndNote: XML, Text | RIS

Rogachev, A. V. ; Kuklin, A. I. ; Cherny, A. Yu. ; Ozerin, A. N. ; Muzafarov, A. M. ; Tatarinova, E. A. ; Gordeliy, V. I.
Structure of Organosilicon Dendrimers of Higher Generations
Physics of the solid state 52, 1045 - 1049 (2010) [10.1134/S1063783410050343]2010 BibTeX | EndNote: XML, Text | RIS

Schröder, G. F. ; Levitt, M. ; Brunger, A. T.
Super-resolution biomolecular crystallography with low-resolution data
Nature <London> 464, 1218 - 1222 (2010) [10.1038/nature08892]2010 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Schünke, S. ; Lecher, J. ; Stoldt, M. ; Kaupp, U. B. ; Willbold, D.
Resonance assignments of the nucleotide-free wildtype MloK1 cyclic nucleotide-binding domain
Biomolecular NMR assignments 4, 147 - 150 (2010) [10.1007/s12104-010-9231-z]2010 BibTeX | EndNote: XML, Text | RIS

Schwarten, M. ; Stoldt, M. ; Mohrlüder, J. ; Willbold, D.
Solution structure of Atg8 reveals conformational polymorphism of the N-terminal domain
Biochemical and biophysical research communications 395, 426 - 431 (2010) [10.1016/j.bbrc.2010.04.043]2010 BibTeX | EndNote: XML, Text | RIS

Smits, S. H. J. ; Meyer, T. ; Müller, A. ; van Os, N. ; Stoldt, M. ; Willbold, D. ; Schmitt, L. ; Grieshaber, M. K.
Insights into the mechanism of ligand binding to octopine dehydrogenase from Pecten maximus by NMR and crystallography
PLoS one 5, e12312 (2010) [10.1371/journal.pone.0012312]2010 Files Fulltext by Pubmed Central Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Stadler, A. M. ; Schweins, R. ; Zaccai, G. ; Lindner, P.
Observation of a Large-Scale Superstructure in Concentrated Hemoglobin Solutions by Using Small Angle Neutron Scattering
The journal of physical chemistry letters 1, 1805 - 1808 (2010) [10.1021/jz100576c]2010 BibTeX | EndNote: XML, Text | RIS

Stadler, A. M.
Dynamics in Biological Systems as seen by QENS
Zeitschrift für physikalische Chemie 224, 201 - 214 (2010) [10.1524/zpch.2010.6099]2010 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Strodel, B. ; Bauer, M. S. ; Fejer, S. N. ; Koslover, E. F. ; Wales, D. J.
Interpolation Schemes for Peptide Rearrangements
The journal of chemical physics 132, 054101 (2010) [10.1063/1.3273617]2010 Files Fulltext by OpenAccess repository BibTeX | EndNote: XML, Text | RIS

Strodel, B. ; Lee, J. W. L. ; Whittleston, C. S. ; Wales, D. J.
Transmembrane Structures for Alzheimer’s Aß1-42 Oligomers
Journal of the American Chemical Society 132, 13300 - 13312 (2010) [10.1021/ja103725c]2010 BibTeX | EndNote: XML, Text | RIS

Strodel, B. ; Khalili, M. ; Trygubenko, S. ; Fejer, S. N. ; Wales, D. J. ; Małolepsza, E. (Corresponding author)
Symmetrization of the AMBER and CHARMM force fields
Journal of computational chemistry 31(7), 1402-1409 (2010) [10.1002/jcc.21425]2010 Files Fulltext BibTeX | EndNote: XML, Text | RIS

Venkatachari, N. J. ; Walker, L. A. ; Tastan, O. ; Le, T. ; Dempsey, T. M. ; Li, Y. ; Yanamala, N. ; Srinivasan, A. ; Klein-Seetharaman, J. ; Montelaro, R. C. ; Ayyavoo, V.
Human immunodeficiency virus type 1 Vpr: Oligomerization is an essential feature for its incorporation into virus particles
Virology 7, 119 (2010) [10.1186/1743-422X-7-119]2010 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Wittlich, M. ; Thiagarajan, P. ; Koenig, B. W. ; Hartmann, R. ; Willbold, D.
NMR structure of the transmembrane and cytoplasmic domains of human CD4 in micelles
Biochimica et biophysica acta 1798, 122 - 127 (2010) [10.1016/j.bbamem.2009.09.010]2010 BibTeX | EndNote: XML, Text | RIS

Zhang, G. ; Yanamala, N. ; Lathrop, K. ; Zhang, L. ; Klein-Seetharaman, J. ; Srinivas, H.
Ligand-independent antiapoptotic function of estrogen receptor-beta in lung cancer cells
Molecular endocrinology 24, 1737 - 1747 (2010) [10.1210/me.2010-0125]2010 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Zhang, J. ; Baker, M. L. ; Schröder, G. F. ; Douglas, N. R. ; Reissmann, S. ; Jakana, J. ; Dougherty, M. ; Fu, C. J. ; Levitt, M. ; Ludtke, S. J. ; Frydman, J. ; Chiu, W.
Mechanism of folding chamber closure in a group II chaperonin
Nature <London> 463, 379 - 383 (2010) [10.1038/nature08701]2010 pmc Fulltext by Pubmed Central BibTeX | EndNote: XML, Text | RIS

Last Modified: 25.05.2022