Publications 2023
Publications of IBG-4 in 2023
Poster (After Call)
Structural diversification of bioactive indole-based alkaloids using enzymatic methylation
ACS Publication Symposium - Biological and Medicinal Chemistry, BonnBonn, Germany, 6 Mar 2023 - 8 Mar 2023
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Preprint
Improving Metadata Collection and Aggregation in Plant Phenotyping Experiments with MIAPPE Wizard and DataPLANT
[10.37044/osf.io/ekhdw]
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Journal Article
Atomic Resolution Insights into pH Shift Induced Deprotonation Events in LS-Shaped Aβ(1–42) Amyloid Fibrils
Journal of the American Chemical Society 145(4), 2161–2169 (2023) [10.1021/jacs.2c09231]
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Journal Article
The architecture of the 10‐23 DNA zyme and its implications for DNA ‐mediated catalysis
The FEBS journal 290(8), 2011-2021 (NA) [10.1111/febs.16698]
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Poster (After Call)
ToxPot - Potato side-streams and their potential in a circular bioeconomy
BioSc Forum, JülichJülich, Germany, 17 May 2023 - 17 May 2023
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Poster (After Call)
Potato sidestreams for alkaloid extraction as part of a circular bioeconomy
14th European Congress of Chemical Engineering and 7th European Congress of Applied Biotechnology, BerlinBerlin, Germany, 17 Sep 2023 - 21 Sep 2023
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Poster (After Call)
ToxPot - Potato side-streams and their potential in a circular bioeconomy
BioSC Symposium 2023, BonnBonn, Germany, 6 Nov 2023 - 7 Nov 2023
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Journal Article
AmberTools
Journal of chemical information and modeling 63(20), 6183 - 6191 (2023) [10.1021/acs.jcim.3c01153]
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Journal Article
Loading and Co-Solvent-Triggered Release of Okanin, a C4 Plant Key Enzyme Inhibitor, into/from Functional Microgels
The chemical engineering journal 460, 141631 (2023) [10.1016/j.cej.2023.141631]
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Journal Article
Resolution of Maximum Entropy Method-Derived Posterior Conformational Ensembles of a Flexible System Probed by FRET and Molecular Dynamics Simulations
Journal of chemical theory and computation 19(8), 2389 - 2409 (2023) [10.1021/acs.jctc.2c01090]
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Journal Article
Diagnostic workup of suspected hereditary cholestasis in adults: a case report
Exploration of digestive diseases 2, 34-43 (2023) [10.37349/edd.2023.00016]
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Journal Article
Ontologies for increasing the FAIRness of plant research data
Frontiers in plant science 14, 1279694 (2023) [10.3389/fpls.2023.1279694]
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Contribution to a conference proceedings
DataPLANT - Harnessing the Power of Ontologies for FAIR Research Data Management
E-Science-Tage 2023: Empower Your Research – Preserve Your Data, HeidelbergHeidelberg, Germany, 1 Mar 2023 - 3 Mar 2023
89-100 (2023) [10.11588/heibooks.1288.c18067]
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Conference Presentation (After Call)
Harnessing the power of ontologies for FAIR research data management
E-Science-Tage 2023: Empower Your Research – Preserve Your Data, HeidelbergHeidelberg, Germany, 1 Mar 2023 - 3 Mar 2023
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Journal Article
Cumulative Millisecond-Long Sampling for a Comprehensive Energetic Evaluation of Aqueous Ionic Liquid Effects on Amino Acid Interactions
Journal of chemical information and modeling 63(1), 281–298 (NA) [10.1021/acs.jcim.2c01123]
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Journal Article
The potential of integrative phenomics to harness underutilized crops for improving stress resilience
Frontiers in plant science 14, 1216337 (2023) [10.3389/fpls.2023.1216337]
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Journal Article
Going broad and deep: sequencing‐driven insights into plant physiology, evolution, and crop domestication
The plant journal 113(3), 446 - 459 (2023) [10.1111/tpj.16070]
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Journal Article
Application of the C3-Methyltransferase StspM1 for the Synthesis of the Natural Pyrroloindole Motif
ACS catalysis 14(XXX), 227–236 (NA) [10.1021/acscatal.3c04952]
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Poster (After Call)
Selective Biocatalytic Methylation of Dipeptides as a tool for Natural Product Synthesis
ACS Publication Symposium - Biological and Medicinal Chemistry, BonnBonn, Germany, 6 Mar 2023 - 8 Mar 2023
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Poster (Invited)
Investigations on the C3-Methyltransferase StspM1 and its Application in Natural Product Synthesis
35. Irseer Naturstofftage, IrseeIrsee, Germany, 26 Apr 2023 - 28 Apr 2023
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Poster (After Call)
Application of the C3-Methyltransferase StspM1 as Catalyst for the Formation of the Pyrroloindole motive in Natural Product Synthesis
Biotrans 2023, La RochelleLa Rochelle, France, 25 Jun 2023 - 29 Jun 2023
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Preprint
Helixer– de novo Prediction of Primary Eukaryotic Gene Models Combining Deep Learning and a Hidden Markov Model
[10.1101/2023.02.06.527280]
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Journal Article
The giant diploid faba genome unlocks variation in a global protein crop
Nature <London> 615(7953), 652 - 659 (2023) [10.1038/s41586-023-05791-5]
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Journal Article
Genomic, transcriptomic, and metabolomic analysis of Oldenlandia corymbosa reveals the biosynthesis and mode of action of anti‐cancer metabolites
Journal of integrative plant biology 65(6), 1442 - 1466 (2023) [10.1111/jipb.13469]
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Journal Article
A novel binding site in the nicotinic acetylcholine receptor for MB327 can explain its allosteric modulation relevant for organophosphorus-poisoning treatment
Toxicology letters 373, 160-171 (2023) [10.1016/j.toxlet.2022.11.018]
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Journal Article
DivBrowse—interactive visualization and exploratory data analysis of variant call matrices
GigaScience 12, giad025 (2023) [10.1093/gigascience/giad025]
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Dissertation / PhD Thesis
Rhizosphere models and their application to resource uptake efficiency
RWTH Aachen University 1 Online-Ressource : Illustrationen (2023) [10.18154/RWTH-2023-11292] = Dissertation, RWTH Aachen, 2023
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Journal Article
Combining structural and coevolution information to unveil allosteric sites
Chemical science 14(25), 7057-7067 (2023) [10.1039/D2SC06272K]
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Journal Article
Regulation of STING activity in DNA sensing by ISG15 modification
Cell reports 42(11), 113277 - (2023) [10.1016/j.celrep.2023.113277]
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Journal Article
Development and Validation of a Multilingual Lexicon as a Key Tool for the Sensory Analyses and Consumer Tests of Blueberry and Raspberry Fruit
Agriculture 13(2), 314 - (2023) [10.3390/agriculture13020314]
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Preprint
Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana
The plant cell koad059 (2023)
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Journal Article
Hello darkness, my old friend: 3-KETOACYL-COENZYME A SYNTHASE4 is a branch point in the regulation of triacylglycerol synthesis in Arabidopsis thaliana
The plant cell 35(6), 1984 - 2005 (2023) [10.1093/plcell/koad059]
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Journal Article
Enzyme adaptation to habitat thermal legacy shapes the thermal plasticity of marine microbiomes
Nature Communications 14(1), 1045 (2023) [10.1038/s41467-023-36610-0]
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Journal Article
QTL analysis for ascorbic acid content in strawberry fruit reveals a complex genetic architecture and association with GDP-L-galactose phosphorylase
Horticulture research 10(3), uhad006 (2023) [10.1093/hr/uhad006]
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Journal Article
LISTER: Semiautomatic Metadata Extraction from Annotated Experiment Documentation in eLabFTW
Journal of chemical information and modeling 63(20), 6224 - 6238 (2023) [10.1021/acs.jcim.3c00744]
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Journal Article
Advances in fruit development and ripening
The journal of experimental botany 74(20), 6205 - 6206 (2023) [10.1093/jxb/erad379]
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Journal Article
Characterization of Bioactive Phenolic Compounds in Seeds of Chilean Quinoa (Chenopodium quinoa Willd.) Germplasm
Agronomy 13(8), 2170 - (2023) [10.3390/agronomy13082170]
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Preprint
Deep learning the cis-regulatory code for gene expression in selected model plants
[10.21203/rs.3.rs-2873437/v1]
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Journal Article
An archaeal lid-containing feruloyl esterase degrades polyethylene terephthalate
Communications chemistry 6(1), 193 (2023) [10.1038/s42004-023-00998-z]
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Journal Article
Integrative dynamic structural biology unveils conformers essential for the oligomerization of a large GTPase
eLife 12, e79565 (2023) [10.7554/eLife.79565]
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Journal Article
Pitfalls and potential of high-throughput plant phenotyping platforms
Frontiers in plant science 14, 1233794 (2023) [10.3389/fpls.2023.1233794] special issue: "Plant Phenotyping for a Sustainable Future"
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Journal Article
Dissecting the impact of environment, season and genotype on blackcurrant fruit quality traits
Food chemistry 402, 134360 - (2023) [10.1016/j.foodchem.2022.134360]
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Journal Article
SWEET11b transports both sugar and cytokinin in developing barley grains
The plant cell 35(6), 2186 - 2207 (2023) [10.1093/plcell/koad055]
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Poster (After Call)
MetaProcess: Engineering enzymes for sustainable metaraminol production
Topic 7 Herbsttagung - Towards a Sustainable Bioeconomy, JülichJülich, Germany, 6 Dec 2023 - 6 Dec 2023
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Poster (After Call)
MetaProcess: How enzyme engineering supports the sustainable synthesis of chiral amino alcohols
6th Multistep Enzyme Catalyzed Processes, MECP 2024, WienWien, Austria, 14 Apr 2024 - 17 Apr 2024
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Poster (Invited)
The German contribution to the European bioinformatics research infrastructure for life sciences ELIXIR: Services, training & cloud computing
ELIXIR All Hands 2023, DublinDublin, Ireland, 5 Jun 2023 - 8 Jun 2023
[10.7490/F1000RESEARCH.1119529.1]
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Journal Article
FAIRagro: Ein Konsortium in der Nationalen Forschungsdateninfrastruktur (NFDI) für Forschungsdaten in der Agrosystemforschung
Informatik-Spektrum 46, 24-35 (2023) [10.1007/s00287-022-01520-w]
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Journal Article
Functional characterization of novel or yet uncharacterized ATP7B missense variants detected in patients with clinical Wilson's disease
Clinical genetics 104(2), 174-185 (2023) [10.1111/cge.14352]
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Journal Article
Metabolomics and machine learning technique revealed that germination enhances the multi-nutritional properties of pigmented rice
Communications biology 6(1), 1000 (2023) [10.1038/s42003-023-05379-9]
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Journal Article
The cyclophilin A-binding loop of the capsid regulates the human TRIM5α sensitivity of nonpandemic HIV-1
Proceedings of the National Academy of Sciences of the United States of America 120(48), e2306374120 (2023) [10.1073/pnas.2306374120]
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Journal Article
TopEnzyme: a framework and database for structural coverage of the functional enzyme space
Bioinformatics 39(3), btad116 (2023) [10.1093/bioinformatics/btad116]
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Journal Article
PLANTdataHUB : a collaborative platform for continuous FAIR data sharing in plant research
The plant journal 116(4), 974-988 (2023) [10.1111/tpj.16474]
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Journal Article
Expanding the clinical and immunological phenotypes of PAX1-deficient SCID and CID patients
Clinical immunology 255, 109757 (2023) [10.1016/j.clim.2023.109757]
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Preprint
DataPLAN: a web-based data management plan generator for the plant sciences
[10.1101/2023.07.07.548147]
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Journal Article
DataPLAN: A Web-Based Data Management Plan Generator for the Plant Sciences
Data 8(11), 159 - (2023) [10.3390/data8110159]
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Poster (After Call)
DataPLAN: a FAIR and Fast Data-Management-Plan Tool
E-Science-Tage 2023: Empower Your Research – Preserve Your Data, HeidelbergHeidelberg, Deutschland, 1 Mar 2023 - 3 Mar 2023
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Journal Article
Does Constitutive Expression of Defense-Related Genes and Salicylic Acid Concentrations Correlate with Field Resistance of Potato to Black Scurf Disease?
Bioengineering 10(11), 1244 - (2023) [10.3390/bioengineering10111244]
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